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[173200_s_at] innexin

Description AV184903_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184903 /DEF=Caenorhabditis elegans cDNA clone:yk671a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 93      6grp_total > 68      4grp_total > 13      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 166.9
(-0.5)
P 		130.8
(-2.1)
P 		108.6
(-3)
P 		249
(3)
P 		140
B 149.7
(-0.3)
P 		105.5
(-2.9)
P 		104.4
(-3)
P 		205
(3)
P 		101
C 191.7
(0.6)
P 		132.4
(-1.6)
P 		92.5
(-3)
P 		258.6
(3)
P 		166
avr 169.4
(-0) 		122.9
(-2.1) 		101.8
(-3) 		237.5
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1319
1 2 3 4 5 6 range
A 299.9
(-1.8)
P 		106.5
(-2.9)
P 		129.2
(-2.7)
P 		83
(-3)
P 		176.2
(-2.5)
P 		1146.7
(3)
P 		1064
B 295.5
(-1.9)
P 		121.6
(-2.7)
P 		84.6
(-2.9)
P 		72.1
(-3)
P 		188.1
(-2.4)
P 		1254.5
(3)
P 		1182
C 275.7
(-2.1)
P 		155.2
(-2.7)
P 		91.7
(-3)
P 		86.6
(-3)
P 		214.9
(-2.4)
P 		1391
(3)
P 		1304
avr 290.4
(-1.9) 		127.8
(-2.8) 		101.8
(-2.9) 		80.6
(-3) 		193.1
(-2.4) 		1264.1
(3) 		1184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 60.8
(3)
P 		28.4
(-3)
P 		28.4
(-3)
P 		36.5
(-1.5)
P 		32
B 47.7
(3)
P 		26.1
(-2.5)
P 		24.2
(-3)
P 		43.7
(2)
P 		24
C 63.5
(3)
P 		38.1
(-1.9)
P 		32.3
(-3)
P 		43.6
(-0.8)
P 		31
avr 57.3
(3) 		30.9
(-2.5) 		28.3
(-3) 		41.3
(-0.3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 55.3
(-2.2)
P 		37.9
(-2.6)
P 		28.1
(-2.8)
P 		21.1
(-3)
P 		53.2
(-2.3)
P 		279.2
(3)
P 		258
B 102.8
(-1.9)
P 		40.5
(-2.7)
P 		20.5
(-3)
P 		19.1
(-3)
P 		76.4
(-2.2)
P 		467.8
(3)
P 		449
C 102.2
(-1.9)
P 		47.4
(-2.6)
P 		23.3
(-2.9)
P 		17.4
(-3)
P 		69.5
(-2.3)
P 		465.6
(3)
P 		448
avr 86.8
(-1.9) 		41.9
(-2.6) 		24
(-2.9) 		19.2
(-3) 		66.4
(-2.3) 		404.2
(3) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173200_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26898
Sequence Type Exemplar sequence
Representative Public ID AV184903 NCBI
Target Description AV184903_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184903 /DEF=Caenorhabditis elegans cDNA clone:yk671a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077484 NCBI Caenorhabditis elegans F08G12.10 (innexin) mRNA, complete cds. 11/11 A 
SNAP00000008599 ENSEMBL cdna:SNAP chromosome:CEL140:X:11295107:11296653:-1 11/11 None
GENEFINDER00000008631 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11295107:11296653:-1 11/11 None
F08G12.10 ENSEMBL cdna:known chromosome:CEL140:X:11294886:11296655:-1 gene:F08G12.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11295025-11295285(-) 86.67 86.67
Public Domain and Genome References
Gene Title innexin
Gene Symbol inx-2
Ensembl F08G12.10
Entrez Gene 181318 Entrez gene
SwissProt Q9U3K5 EMBL-EBI
WormBase CE26709 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54206 Hypothetical protein F08G12.10 [Caenorhabditis elegans] ref|NP_509885.1| F08G12.10 [Caenorhabditis elegans] gb|AAG50240.1| innexin [Caenorhabditis elegans] sp|Q9U3K5|INX2_CAEEL Innexin-2 0.0
blast T20594 hypothetical protein F08G12.10 - Caenorhabditis elegans 0.0
blast CAE70668 Hypothetical protein CBG17376 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 9.3E-37
Pfam IPR000990 EMBL-EBI Innexin 9.6E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509885.1 4 31-53,103-125,177-199,271-293
F08G12.10 4 31-53,103-125,177-199,271-293
SNAP00000008599 4 31-53,103-125,177-199,271-293
GENEFINDER00000008631 4 31-53,103-125,177-199,271-293
Sequence
Target Sequence 
>C. ELEGANS:173200_S_AT
agcttgactctgattcatctgctgtgacatcattgaacgaagatcatcccgagagatatg
ttgcattcaacactgacactatcccaatggatcgatatgcgcgcaagcatcactctttga
tcgaagaagtcgatggtccatcagctccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTGACTCTGATTCATCTGCTGT 283 79 14 Antisense
GACTCTGATTCATCTGCTGTGACAT 86 375 19 Antisense
CATCTGCTGTGACATCATTGAACGA 100 213 29 Antisense
TTGAACGAAGATCATCCCGAGAGAT 293 703 46 Antisense
CATCCCGAGAGATATGTTGCATTCA 11 213 58 Antisense
GTTGCATTCAACACTGACACTATCC 173 439 73 Antisense
CAACACTGACACTATCCCAATGGAT 202 189 81 Antisense
ATCCCAATGGATCGATATGCGCGCA 110 39 94 Antisense
GATATGCGCGCAAGCATCACTCTTT 29 427 107 Antisense
GCGCAAGCATCACTCTTTGATCGAA 483 287 114 Antisense
GAAGTCGATGGTCCATCAGCTCCAC 568 331 139 Antisense
Sequence Source Affymetrix Proprietary Database