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[173199_at]

Description AV199007_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199007 /DEF=Caenorhabditis elegans cDNA clone:yk539a12 : 3prime end, single read.
Cluster 6grp_total > 73      4grp_total > 31      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 149.2
(3)
P 		7.7
(-3)
A 		36.4
(-1.8)
A 		49.6
(-1.2)
A 		142
B 99.2
(3)
P 		52.3
(-3)
A 		53.3
(-2.9)
A 		88.1
(1.6)
A 		47
C 93.6
(3)
P 		56.5
(-3)
A 		72.4
(-0.4)
A 		90.2
(2.5)
P 		37
avr 114
(3) 		38.8
(-3) 		54
(-1.8) 		76
(-0) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 9.6
(-3)
A 		43.3
(-1.7)
A 		165.1
(3)
P 		108.2
(0.8)
M 		59.3
(-1.1)
A 		51.7
(-1.4)
P 		156
B 41.2
(-3)
A 		54.9
(-1.9)
A 		71.9
(-0.6)
P 		118.4
(3)
P 		102.9
(1.8)
P 		63.4
(-1.3)
M 		77
C 29
(-3)
A 		83.7
(2.4)
P 		89.5
(3)
P 		78.8
(1.9)
A 		80.2
(2.1)
A 		65.9
(0.7)
A 		61
avr 26.6
(-3) 		60.6
(-0.5) 		108.8
(3) 		101.8
(2.5) 		80.8
(1) 		60.3
(-0.5) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 54.3
(3)
P 		1.7
(-3)
A 		9.5
(-2.1)
A 		7.3
(-2.4)
A 		53
B 31.6
(3)
P 		12.9
(-2.8)
A 		12.4
(-3)
A 		18.8
(-1)
A 		19
C 31
(3)
P 		16.2
(-2.6)
A 		25.2
(0.8)
A 		15.2
(-3)
P 		16
avr 39
(3) 		10.3
(-3) 		15.7
(-1.9) 		13.8
(-2.3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 1.8
(-3)
A 		15.4
(-0.6)
A 		36
(3)
P 		27.4
(1.5)
M 		17.9
(-0.2)
A 		12.6
(-1.1)
P 		34
B 14.3
(-3)
A 		18.3
(-2.1)
A 		17.5
(-2.3)
P 		31.4
(0.7)
P 		41.8
(3)
P 		23.6
(-1)
M 		28
C 10.7
(-3)
A 		25.5
(2.8)
P 		22.8
(1.7)
P 		15.8
(-1)
A 		26
(3)
A 		22.1
(1.5)
A 		15
avr 8.9
(-3) 		19.7
(0.3) 		25.4
(2) 		24.9
(1.9) 		28.6
(3) 		19.4
(0.2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26938
Sequence Type Exemplar sequence
Representative Public ID AV199007 NCBI
Target Description AV199007_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199007 /DEF=Caenorhabditis elegans cDNA clone:yk539a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065000(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065000 NCBI Caenorhabditis elegans Y82E9BR.5 (Y82E9BR.5) mRNA, complete cds. 10/11 None
Y82E9BR.5 ENSEMBL cdna:known chromosome:CEL140:III:1387457:1388127:1 gene:Y82E9BR.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1387827-1388127(+) 99.67 99.67
Public Domain and Genome References
Gene Title
Ensembl Y82E9BR.5
Entrez Gene 175296 Entrez gene
SwissProt Q9BKS5 EMBL-EBI
WormBase CE27046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK26153 Hypothetical protein Y82E9BR.5 [Caenorhabditis elegans] ref|NP_497401.1| Y82E9BR.5 [Caenorhabditis elegans] 6.0E-18
Sequence
Target Sequence 
>C. ELEGANS:173199_AT
tcgacaaatttcatcttcgtcggctntgatcaagacgttttccaatgtcaggcagatggt
cnttaatggttgcccttgaagaattacattgagctttgatatgaagctctggaatttaag
gaggcggcatactattttacgaaactntaatttatggcttaccaatttcactcggctcac
gttactatcatttgcggccatcatccggagcccgtcgatttgctcacgaagcttcactcg
gaaggcgttcaaattggcaatgttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACAAATTTCATCTTCGTCGGCT 699 599 13 Antisense
GACGTTTTCCAATGTCAGGCAGATG 597 377 46 Antisense
AATGGTTGCCCTTGAAGAATTACAT 452 163 77 Antisense
AAGCTCTGGAATTTAAGGAGGCGGC 595 147 116 Antisense
AAGGAGGCGGCATACTATTTTACGA 451 157 130 Antisense
TATGGCTTACCAATTTCACTCGGCT 406 653 165 Antisense
CACTCGGCTCACGTTACTATCATTT 26 199 181 Antisense
GCTCACGTTACTATCATTTGCGGCC 420 299 187 Antisense
TATCATTTGCGGCCATCATCCGGAG 395 659 198 Antisense
ACGAAGCTTCACTCGGAAGGCGTTC 372 53 238 Antisense
GAAGGCGTTCAAATTGGCAATGTTT 587 333 253 Antisense
Sequence Source Affymetrix Proprietary Database