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[173198_s_at] succinate dehydrogenase (ubiquinone) iron sulphur protein

Description g261066 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 27      6grp_total > 42      4grp_total > 60      6grp_highest_sub > 03      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5925
1 2 3 4 range
A 7500.3
(1.9)
P 		8409.7
(3)
P 		8194.1
(2.7)
P 		3361.4
(-3)
P 		5048
B 7488.5
(1.5)
P 		8843.7
(3)
P 		8012.4
(2.1)
P 		3329.9
(-3)
P 		5514
C 7559.6
(2.7)
P 		7818.4
(3)
P 		7085.3
(2.1)
P 		2918.8
(-3)
P 		4900
avr 7516.1
(2) 		8357.3
(3) 		7763.9
(2.3) 		3203.4
(-3) 		5154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3598
1 2 3 4 5 6 range
A 7893.4
(2.1)
P 		7841.3
(1.9)
P 		8166.9
(3)
P 		8010.8
(2.5)
P 		6947.2
(-1.2)
P 		6412.9
(-3)
P 		1754
B 6737.6
(-0.7)
P 		6959.5
(-0.3)
P 		8616.8
(3)
P 		7511.9
(0.8)
P 		6258.7
(-1.7)
P 		5585.7
(-3)
P 		3031
C 6943.4
(-0.9)
P 		6873.5
(-1)
P 		9183.5
(3)
P 		7271
(-0.3)
P 		6752.2
(-1.2)
P 		5705.2
(-3)
P 		3478
avr 7191.5
(-0.2) 		7224.8
(-0.1) 		8655.7
(3) 		7597.9
(0.7) 		6652.7
(-1.4) 		5901.3
(-3) 		2754
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2239
1 2 3 4 range
A 2730.9
(3)
P 		1825.5
(0.6)
P 		2142.1
(1.4)
P 		492
(-3)
P 		2239
B 2388
(3)
P 		2184.2
(2.3)
P 		1856.6
(1.1)
P 		709.6
(-3)
P 		1678
C 2502.4
(3)
P 		2247.8
(2.2)
P 		2469.4
(2.9)
P 		492.2
(-3)
P 		2010
avr 2540.4
(3) 		2085.8
(1.6) 		2156
(1.8) 		564.6
(-3) 		1976

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1334
1 2 3 4 5 6 range
A 1455.1
(-3)
P 		2788.8
(3)
P 		1778.6
(-1.5)
P 		2031.7
(-0.4)
P 		2096.4
(-0.1)
P 		1561.3
(-2.5)
P 		1334
B 2344.4
(0.8)
P 		2316.5
(0.5)
P 		2092.4
(-1.9)
P 		1989.7
(-3)
P 		2542.8
(3)
P 		2082.9
(-2)
P 		553
C 2573.6
(3)
P 		2097.3
(0.4)
P 		2337.4
(1.7)
P 		1462.2
(-3)
P 		2184.9
(0.9)
P 		1909.9
(-0.6)
P 		1111
avr 2124.4
(0.1) 		2400.9
(3) 		2069.5
(-0.5) 		1827.9
(-3) 		2274.7
(1.7) 		1851.4
(-2.8) 		573
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173198_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28101
Sequence Type Exemplar sequence
Representative Public ID 261066 NCBI
Target Description g261066 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063591(11), AB008569(11), S50380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063591 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-55) (tag-55) mRNA, complete cds. 11/11 A 
AB008569 NCBI Caenorhabditis elegans mRNA for iron-sulfur subunit of mitochondrial succinate dehydrogenase, complete cds. 11/11 None
S50380 NCBI succinate-ubiquinone oxidoreductase complex II iron-sulfur subunit [Caenorhabditis elegans, var. Bristol, mRNA Partial, 483 nt]. 11/11 None
SNAP00000044379 ENSEMBL cdna:SNAP chromosome:CEL140:II:9350782:9352643:-1 11/11 None
GENEFINDER00000044386 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9350782:9352643:-1 11/11 None
F42A8.2.3 ENSEMBL cdna:known chromosome:CEL140:II:9350568:9352643:-1 gene:F42A8.2 11/11 None
F42A8.2.1 ENSEMBL cdna:known chromosome:CEL140:II:9350615:9352643:-1 gene:F42A8.2 11/11 A 
F42A8.2.2 ENSEMBL cdna:known chromosome:CEL140:II:9350615:9352709:-1 gene:F42A8.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9350948-9351594(-) 88.61 88.61
Public Domain and Genome References
Gene Title succinate dehydrogenase (ubiquinone) iron sulphur protein
Gene Symbol tag-55
Ensembl F42A8.2
Entrez Gene 174482 Entrez gene
SwissProt Q09545 EMBL-EBI
WormBase CE01579 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249343_AT succinate dehydrogenase, iron-sulphur subunit, mitochondrial (SDH2-2) at
CANINE:1584695_AT similar to Succinate dehydrogenase [ubiquinone] iron-sulfur protein, mitochondrial precursor (Ip) (Iron-sulfur subunit of complex II) cfa
CANINE_2:CFAAFFX.24257.1.S1_S_AT similar to Succinate dehydrogenase [ubiquinone] iron-sulfur protein, mitochondrial precursor (Ip) (Iron-sulfur subunit of complex II) cfa
CANINE_2:CFAAFFX.3371.1.S1_S_AT similar to Succinate dehydrogenase [ubiquinone] iron-sulfur protein, mitochondrial precursor (Ip) (Iron-sulfur subunit of complex II) cfa
DROSOPHILA_2:1640632_AT Succinate dehydrogenase B dm
DROSGENOME1:154195_AT Succinate dehydrogenase B dm
HG-U133_PLUS_2:202675_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-U133A:202675_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-FOCUS:202675_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-U133A_2:202675_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HUGENEFL:U17886_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
U133_X3P:G9257241_3P_S_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
U133_X3P:HS.64.1.S1_3P_X_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
U133_X3P:HS.64.1.S1_3P_S_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
U133_X3P:202675_3P_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-U133A_2:214166_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-U133_PLUS_2:214166_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-U133A:214166_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
HG-U95AV2:35751_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) hs
MU11KSUBA:AA245912_F_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) mm
MG-U74AV2:95053_S_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) mm
MG-U74BV2:164293_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) mm
MOE430A:1418005_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) mm
MOUSE430A_2:1418005_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) mm
MOUSE430_2:1418005_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) mm
MU19KSUBA:TC22985_F_AT Succinate dehydrogenase complex, subunit B, iron sulfur (Ip), mRNA (cDNA clone MGC:19177 IMAGE:4225025) mm
MU19KSUBA:TC22985_I_AT Succinate dehydrogenase complex, subunit B, iron sulfur (Ip), mRNA (cDNA clone MGC:19177 IMAGE:4225025) mm
MU19KSUBC:TC36260_AT Succinate dehydrogenase complex, subunit B, iron sulfur (Ip), mRNA (cDNA clone MGC:19177 IMAGE:4225025) mm
MU19KSUBC:TC36271_AT Succinate dehydrogenase complex, subunit B, iron sulfur (Ip), mRNA (cDNA clone MGC:19177 IMAGE:4225025) mm
RG-U34C:RC_AI172320_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (predicted) rn
RAE230A:1372123_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (predicted) rn
RAT230_2:1372123_AT succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (predicted) rn
YEAST_2:1777010_AT Iron-sulfur protein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6099 tricarboxylic acid cycle inferred from electronic annotation QuickGO AmiGO
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87780 Hypothetical protein F42A8.2 [Caenorhabditis elegans] ref|NP_495992.1| Temporarily Assigned Gene name family member (tag-55) [Caenorhabditis elegans] sp|Q09545|DHSB_CAEEL Putative succinate dehydrogenase [ubiquinone] iron-sulfur protein, mitochondrial precursor (IP) (IP subunit of complex II) 1.0E-165
blast BAA23717.1 iron-sulfur subunit of mitochondrial succinate dehydrogenase [Caenorhabditis elegans] 1.0E-157
blast CAA87780 Hypothetical protein F42A8.2 [Caenorhabditis elegans] ref|NP_495992.1| Temporarily Assigned Gene name family member (tag-55) [Caenorhabditis elegans] sp|Q09545|DHSB_CAEEL Putative succinate dehydrogenase [ubiquinone] iron-sulfur protein, mitochondrial precursor (IP) (IP subunit of complex II) 1.0E-157
Protein Domains
Database ID Description E-Value
scop a.1.2.Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain All alpha proteins; Globin-like; alpha-helical ferredoxin; Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 0.0
Pfam IPR001041 EMBL-EBI Ferredoxin 1.6E-4
Pfam IPR001041 EMBL-EBI Ferredoxin 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:173198_S_AT
aaagagcaccaaaatctacccacttccacatatgttcgttgtgaaggaccttgtcccaga
tatgaacctcttctacgctcaatatgcctctattcaaccatggattcaaaagaagacccc
attgactcttggagaaaagcagatgcaccaaagtgtggctgaacgtgatcgtcttgatgg
tctctacgagtgtattctctgtgcttgctgctccacgtcatgcccatcctactggtggaa
tgctgataagtacctcggtccagctgttctcatgcaagcctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAGCACCAAAATCTACCCACTT 473 123 102 Antisense
ACCCACTTCCACATATGTTCGTTGT 361 91 119 Antisense
GTCCCAGATATGAACCTCTTCTACG 256 475 154 Antisense
TCTTCTACGCTCAATATGCCTCTAT 324 617 170 Antisense
ATGCCTCTATTCAACCATGGATTCA 515 39 185 Antisense
AAGAAGACCCCATTGACTCTTGGAG 196 153 211 Antisense
AAAGTGTGGCTGAACGTGATCGTCT 612 121 251 Antisense
ACGAGTGTATTCTCTGTGCTTGCTG 10 95 287 Antisense
TCATGCCCATCCTACTGGTGGAATG 512 621 319 Antisense
GAATGCTGATAAGTACCTCGGTCCA 324 331 339 Antisense
TCCAGCTGTTCTCATGCAAGCCTAC 223 589 360 Antisense
Sequence Source GenBank