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[173197_at]

Description g156231 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 50      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 530.4
(3)
P 		394.4
(-0.4)
P 		336
(-1.9)
P 		293.2
(-3)
P 		237
B 729.4
(3)
P 		384
(-1.7)
P 		288.2
(-3)
P 		427.4
(-1.1)
P 		441
C 512.4
(3)
P 		304.6
(-2)
P 		264.3
(-3)
P 		450.8
(1.5)
P 		248
avr 590.7
(3) 		361
(-1.7) 		296.2
(-3) 		390.5
(-1.1) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 790
(3)
P 		289.9
(-2.1)
P 		520.2
(0.2)
P 		241.6
(-2.6)
P 		586.9
(0.9)
P 		204.3
(-3)
P 		586
B 912.1
(3)
P 		832.7
(2.1)
P 		560.4
(-1)
P 		480.1
(-1.9)
P 		438.7
(-2.3)
P 		380.9
(-3)
P 		531
C 263.4
(-3)
P 		798.6
(3)
P 		364.3
(-1.9)
P 		394.4
(-1.5)
P 		316.1
(-2.4)
P 		332.6
(-2.2)
P 		535
avr 655.2
(3) 		640.4
(2.7) 		481.6
(0) 		372
(-1.9) 		447.2
(-0.6) 		305.9
(-3) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 193.1
(3)
P 		85.6
(-1.3)
P 		87.8
(-1.2)
P 		42.9
(-3)
P 		150
B 232.6
(3)
P 		94.8
(-2)
P 		66.8
(-3)
P 		91.1
(-2.1)
P 		166
C 169.6
(3)
P 		87.6
(-2.3)
P 		92.1
(-2)
P 		76
(-3)
P 		94
avr 198.4
(3) 		89.3
(-2.1) 		82.2
(-2.4) 		70
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 145.6
(1.5)
P 		103.1
(-0.5)
P 		113.3
(-0)
P 		61.3
(-2.5)
P 		177.1
(3)
P 		49.7
(-3)
P 		127
B 317.4
(3)
P 		277.2
(1.7)
P 		136.1
(-2.7)
P 		127.2
(-3)
P 		178.2
(-1.4)
P 		142
(-2.5)
P 		190
C 97.6
(-2.3)
P 		243.7
(3)
P 		92.7
(-2.5)
P 		79.3
(-3)
P 		102.3
(-2.2)
P 		111.3
(-1.8)
P 		164
avr 186.9
(1.9) 		208
(3) 		114
(-1.8) 		89.3
(-3) 		152.5
(0.2) 		101
(-2.4) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28086
Sequence Type Exemplar sequence
Representative Public ID 156231 NCBI
Target Description g156231 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) M37120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M37120 NCBI Caenorhabditis elegans cAMP-dependent protein kinase catalytic subunit C mRNA, 3' UTR. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073724 1/11 Cross Hyb Matching Probes A 
F28C1.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14959482-14960226(+) 95.34 95.34
Sequence
Target Sequence 
>C. ELEGANS:173197_AT
tttgccgagttttaattcattatctttgtcgattccttccataagctttttgtttcaaat
ttcactctctctctctctcttttccatattcctcaaaattgtactagtccaaaacaaaac
cctgtccctattgtccggtggtttgtcttccctcacccaaaccttctcattctcagccaa
attgaattcaatattgttgcgacaattgaaaatgatgaagatgcttactatttcttccct
tccttctgaaccccttattttttaatgttcatacattttcttgccccgatcccgtccccc
taataataatttgtaaaaataatagattggaatttgctcnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnctagtcaacccctgactttccctcctccaattcagcctcccgcaaactt
ttttctagaaaagttgacttctgtctcaacaaagaaatggaatcccacaaaaccattaat
tgtatgtttttttctcattttccttttcctctctcatgtatacatat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCGAGTTTTAATTCATTATCT 411 669 132 Antisense
TCATTATCTTTGTCGATTCCTTCCA 655 619 148 Antisense
GATTCCTTCCATAAGCTTTTTGTTT 459 433 162 Antisense
TTGTTTCAAATTTCACTCTCTCTCT 618 705 181 Antisense
CTCTCTTTTCCATATTCCTCAAAAT 188 231 206 Antisense
ATTCCTCAAAATTGTACTAGTCCAA 567 7 219 Antisense
ACCTTCTCATTCTCAGCCAAATTGA 454 87 292 Antisense
AAGATGCTTACTATTTCTTCCCTTC 372 155 349 Antisense
AATGTTCATACATTTTCTTGCCCCG 25 165 395 Antisense
GAAAAGTTGACTTCTGTCTCAACAA 134 355 559 Antisense
CTTTTCCTCTCTCATGTATACATAT 91 223 634 Antisense
Sequence Source GenBank