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[173196_s_at]

Description g1619858 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 12      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 491.3
(-1.1)
P 		341.9
(-2.4)
P 		275.4
(-3)
P 		942.5
(3)
P 		667
B 465.6
(0.3)
P 		315.4
(-2.9)
P 		312.7
(-3)
P 		590.8
(3)
P 		278
C 450.2
(-1.5)
P 		490.7
(-1.1)
P 		307.3
(-3)
P 		893.4
(3)
P 		586
avr 469
(-1) 		382.7
(-2) 		298.5
(-3) 		808.9
(3) 		510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 450.7
(2.2)
P 		357.8
(-0.9)
P 		475.4
(3)
P 		382.4
(-0.1)
P 		334
(-1.7)
P 		295.9
(-3)
P 		180
B 474.4
(3)
P 		472
(2.9)
P 		379
(-0.7)
P 		318.7
(-3)
P 		402.2
(0.2)
P 		345.1
(-2)
P 		156
C 434.5
(1.5)
P 		480.1
(3)
P 		299.5
(-3)
P 		401.9
(0.4)
P 		353.2
(-1.2)
P 		301.1
(-2.9)
P 		181
avr 453.2
(3) 		436.6
(2.3) 		384.6
(0) 		367.7
(-0.7) 		363.1
(-0.9) 		314
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 178.9
(3)
P 		74.2
(-2.9)
P 		72
(-3)
P 		138
(0.7)
P 		107
B 148.5
(3)
P 		77.9
(-2.6)
P 		72.5
(-3)
P 		125.9
(1.2)
P 		76
C 149
(2.8)
P 		141.1
(1.7)
P 		107.1
(-3)
P 		150.6
(3)
P 		44
avr 158.8
(3) 		97.7
(-1.9) 		83.9
(-3) 		138.2
(1.3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 83.1
(-1.8)
P 		127.3
(3)
P 		103.5
(0.4)
P 		97
(-0.3)
P 		100.8
(0.1)
P 		72
(-3)
P 		55
B 165.1
(3)
P 		157.1
(2.4)
P 		92
(-2.4)
P 		84.4
(-3)
P 		163.4
(2.9)
P 		128.7
(0.3)
P 		81
C 161.1
(3)
P 		146.5
(2)
P 		76.2
(-3)
P 		80.8
(-2.7)
P 		114.3
(-0.3)
P 		100.8
(-1.3)
P 		85
avr 136.4
(2.2) 		143.6
(3) 		90.6
(-2.7) 		87.4
(-3) 		126.2
(1.1) 		100.5
(-1.6) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173196_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28098
Sequence Type Exemplar sequence
Representative Public ID 1619858 NCBI
Target Description g1619858 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070175(11), U68260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070175 NCBI Caenorhabditis elegans RAB family member (rab-19) (rab-19) mRNA, complete cds. 11/11 A 
U68260 NCBI Caenorhabditis elegans rab19-like mRNA, partial cds. 11/11 None
SNAP00000008078 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13382112:13386057:-1 11/11 None
GENEFINDER00000008101 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13382045:13386057:-1 11/11 None
Y62E10A.9.2 ENSEMBL cdna:known chromosome:CEL140:IV:13382058:13386060:-1 gene:Y62E10A.9 11/11 A 
Y62E10A.9.1 ENSEMBL cdna:known chromosome:CEL140:IV:13382068:13386060:-1 gene:Y62E10A.9 11/11 A 
Y62E10A.9.3 ENSEMBL cdna:known chromosome:CEL140:IV:13382112:13383926:-1 gene:Y62E10A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13383585-13383934(-) 88.31 88.31
Public Domain and Genome References
Gene Title
Gene Symbol rab-19
Ensembl Y62E10A.9
Entrez Gene 178301 Entrez gene
SwissProt Q9U1W9 EMBL-EBI
WormBase CE24543 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624118_AT Rab-related protein 3 dm
DROSGENOME1:143844_AT Rab-related protein 3 dm
CHICKEN:GGAAFFX.3126.1.S1_AT similar to Ras-related protein Rab gga
HG-U133B:229894_S_AT RAB43, member RAS oncogene family hs
HG-U133_PLUS_2:229894_S_AT RAB43, member RAS oncogene family hs
HU35KSUBA:RC_AA155803_AT RAB43, member RAS oncogene family hs
U133_X3P:HS.33122.4.S1_3P_A_AT RAB43, member RAS oncogene family hs
U133_X3P:HS.33122.3.A1_3P_A_AT RAB43, member RAS oncogene family hs
HG-U133_PLUS_2:225632_S_AT RAB43, member RAS oncogene family hs
HG-U133B:225632_S_AT RAB43, member RAS oncogene family hs
HG-U95C:65692_AT RAB43, member RAS oncogene family hs
HG-U95E:75006_AT RAB43, member RAS oncogene family hs
RAE230B:1394486_AT Ras-related protein RAB43 rn
RAT230_2:1394486_AT Ras-related protein RAB43 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60605 Hypothetical protein Y62E10A.9 [Caenorhabditis elegans] ref|NP_502576.1| RAB family member (rab-19) [Caenorhabditis elegans] 1.0E-119
blast CAB60605 Hypothetical protein Y62E10A.9 [Caenorhabditis elegans] ref|NP_502576.1| RAB family member (rab-19) [Caenorhabditis elegans] 1.0E-118
blast CAE58611 Hypothetical protein CBG01778 [Caenorhabditis briggsae] 1.0E-111
blast CAE58611 Hypothetical protein CBG01778 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.0E-77
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 8.5E-29
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.0E-77
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.0E-77
Sequence
Target Sequence 
>C. ELEGANS:173196_S_AT
acgatgatggatttgactatttgttcaaaattgtgcttgtcggcgatatgggagtcggaa
agacatgtgtagttcaacgcttcagaaatggaacatttgttgatcgtcagggaaccacta
tcggcgtcgatttcacaatgaaaactcttgtcgttgacggaaagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATGATGGATTTGACTATTTGTT 569 93 61 Antisense
TTCAAAATTGTGCTTGTCGGCGATA 152 685 84 Antisense
GCTTGTCGGCGATATGGGAGTCGGA 375 303 95 Antisense
GGGAGTCGGAAAGACATGTGTAGTT 30 495 110 Antisense
GACATGTGTAGTTCAACGCTTCAGA 417 369 122 Antisense
GTAGTTCAACGCTTCAGAAATGGAA 96 457 129 Antisense
TGGAACATTTGTTGATCGTCAGGGA 377 547 149 Antisense
ATCGTCAGGGAACCACTATCGGCGT 275 33 163 Antisense
GGCGTCGATTTCACAATGAAAACTC 565 539 183 Antisense
CAATGAAAACTCTTGTCGTTGACGG 43 183 196 Antisense
AACTCTTGTCGTTGACGGAAAGCGT 110 141 203 Antisense
Sequence Source GenBank