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[173194_s_at]

Description AV179810_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV179810 /DEF=Caenorhabditis elegans cDNA clone:yk598c12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 23      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_total > 40      4grp_total > 60      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 148.8
(-2.5)
P 		150.6
(-2.3)
P 		223.6
(3)
P 		141.4
(-3)
P 		82
B 194.3
(3)
P 		144.5
(-1.3)
P 		151.4
(-0.7)
P 		124
(-3)
P 		70
C 215.9
(1.9)
P 		231.2
(3)
P 		220
(2.2)
P 		148.8
(-3)
P 		82
avr 186.3
(1.8) 		175.4
(0.7) 		198.3
(3) 		138.1
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 153.4
(1.2)
P 		123.3
(0)
P 		201
(3)
P 		104
(-0.7)
P 		44.8
(-3)
A 		135.3
(0.5)
P 		156
B 155.2
(-0.7)
P 		230.6
(3)
P 		166.6
(-0.1)
P 		163.6
(-0.3)
P 		122.8
(-2.3)
P 		107.7
(-3)
P 		123
C 160.8
(0.2)
P 		243.4
(3)
P 		85.6
(-2.3)
P 		217
(2.1)
P 		100.8
(-1.8)
P 		66.4
(-3)
P 		177
avr 156.5
(0.7) 		199.1
(3) 		151.1
(0.4) 		161.5
(0.9) 		89.5
(-3) 		103.1
(-2.3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 54.2
(2.3)
P 		32.7
(-1.1)
P 		58.4
(3)
P 		20.7
(-3)
P 		38
B 61.9
(3)
P 		35.7
(-1.4)
P 		35.1
(-1.5)
P 		26.4
(-3)
P 		36
C 71.5
(2.4)
P 		66.5
(1.8)
P 		76.7
(3)
P 		25.1
(-3)
P 		52
avr 62.5
(3) 		45
(0.3) 		56.7
(2.1) 		24.1
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 28.3
(-0.1)
P 		43.8
(3)
P 		43.8
(3)
P 		26.4
(-0.4)
P 		13.5
(-3)
A 		32.9
(0.8)
P 		30
B 54
(-0.7)
P 		76.8
(3)
P 		40.5
(-2.9)
P 		43.3
(-2.5)
P 		49.9
(-1.4)
P 		40.1
(-3)
P 		37
C 59.6
(1.3)
P 		74.3
(3)
P 		21.8
(-3)
P 		43.6
(-0.5)
P 		32.6
(-1.8)
P 		22.2
(-3)
P 		53
avr 47.3
(-0.2) 		65
(3) 		35.4
(-2.3) 		37.8
(-1.9) 		32
(-2.9) 		31.7
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173194_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26676
Sequence Type Exemplar sequence
Representative Public ID AV179810 NCBI
Target Description AV179810_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV179810 /DEF=Caenorhabditis elegans cDNA clone:yk598c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026473 NCBI Caenorhabditis elegans T28F2.4a (T28F2.4) mRNA, complete cds. 11/11 None
SNAP00000038903 ENSEMBL cdna:SNAP chromosome:CEL140:I:3631287:3636477:-1 11/11 None
GENEFINDER00000038909 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3631287:3636477:-1 11/11 None
T28F2.4a ENSEMBL cdna:known chromosome:CEL140:I:3631098:3636485:-1 gene:T28F2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171932 2 1 NM_001026473 173194_s_at (11), 183360_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3631192-3631435(-) 80.67 80.67
Public Domain and Genome References
Ensembl T28F2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53055 Hypothetical protein T28F2.4a [Caenorhabditis elegans] ref|NP_001021644.1| T28F2.4a [Caenorhabditis elegans] 0.0
blast CAE66651 Hypothetical protein CBG11988 [Caenorhabditis briggsae] 0.0
blast XP_782527 PREDICTED: similar to RIKEN cDNA 2410016O06, partial [Strongylocentrotus purpuratus] 4.0E-76
Sequence
Target Sequence 
>C. ELEGANS:173194_S_AT
atagggtcctgtcaaattcttatcctgaatggagaactctgtatgagatcttctcgttga
gagagacgaagacgaagagcagaaaagagaacttggcagccatccaacttttgttccaga
ttggggttcttttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGGGTCCTGTCAAATTCTTATCC 120 19 16 Antisense
GGTCCTGTCAAATTCTTATCCTGAA 140 503 20 Antisense
TCTTATCCTGAATGGAGAACTCTGT 147 613 33 Antisense
AGAACTCTGTATGAGATCTTCTCGT 617 73 48 Antisense
CTCTGTATGAGATCTTCTCGTTGAG 436 231 52 Antisense
GAGATCTTCTCGTTGAGAGAGACGA 185 397 60 Antisense
GAAAAGAGAACTTGGCAGCCATCCA 496 351 97 Antisense
GAGAACTTGGCAGCCATCCAACTTT 95 391 102 Antisense
TTGGCAGCCATCCAACTTTTGTTCC 262 709 108 Antisense
GCCATCCAACTTTTGTTCCAGATTG 164 281 114 Antisense
TGTTCCAGATTGGGGTTCTTTTGGT 586 561 127 Antisense
Sequence Source Affymetrix Proprietary Database