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[173192_s_at]

Description AV176061_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV176061 /DEF=Caenorhabditis elegans cDNA clone:yk507d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 67      6grp_total > 58      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2067
1 2 3 4 range
A 1336.3
(-3)
P 		1659.3
(-2)
P 		1631.6
(-2.1)
P 		3266.4
(3)
P 		1930
B 1445.6
(-2.6)
P 		1314.2
(-3)
P 		1791.3
(-1.6)
P 		3343.9
(3)
P 		2030
C 1277.4
(-3)
P 		1309.4
(-2.9)
P 		1525.3
(-2.3)
P 		3304.5
(3)
P 		2027
avr 1353.1
(-3) 		1427.6
(-2.8) 		1649.4
(-2.1) 		3304.9
(3) 		1952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 856
1 2 3 4 5 6 range
A 1739.6
(2.1)
P 		1434
(-1.6)
P 		1757.8
(2.3)
P 		1818
(3)
P 		1319.5
(-3)
P 		1778
(2.5)
P 		499
B 1947.8
(3)
P 		1793
(1.3)
P 		1546.2
(-1.5)
P 		1412.4
(-3)
P 		1685.3
(0.1)
P 		1918.1
(2.7)
P 		535
C 2112.7
(3)
P 		1360.9
(-2.3)
P 		1777.3
(0.7)
P 		1256.3
(-3)
P 		1583.7
(-0.7)
P 		1845.9
(1.1)
P 		856
avr 1933.4
(3) 		1529.3
(-2.5) 		1693.8
(-0.3) 		1495.6
(-3) 		1529.5
(-2.5) 		1847.3
(1.8) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 486.5
(3)
P 		360.2
(-3)
P 		426.5
(0.1)
P 		478.1
(2.6)
P 		126
B 461
(-0.9)
P 		324.6
(-3)
P 		415.1
(-1.6)
P 		712.6
(3)
P 		388
C 422.8
(-1.5)
P 		376.5
(-3)
P 		531.6
(2.1)
P 		557.2
(3)
P 		181
avr 456.8
(-0.3) 		353.8
(-3) 		457.7
(-0.3) 		582.6
(3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 531
1 2 3 4 5 6 range
A 320.7
(-3)
P 		510
(3)
P 		382.8
(-1)
P 		461.1
(1.5)
P 		398.2
(-0.5)
P 		432.9
(0.6)
P 		189
B 677.7
(2.3)
P 		596.8
(0.9)
P 		375.5
(-3)
P 		374.1
(-3)
P 		684.7
(2.5)
P 		715.3
(3)
P 		341
C 783.1
(3)
P 		415.3
(-1.2)
P 		452.3
(-0.7)
P 		252.6
(-3)
P 		512.5
(-0.1)
P 		617.9
(1.1)
P 		531
avr 593.8
(3) 		507.4
(0.8) 		403.5
(-1.9) 		362.6
(-3) 		531.8
(1.4) 		588.7
(2.9) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173192_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27038
Sequence Type Exemplar sequence
Representative Public ID AV176061 NCBI
Target Description AV176061_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV176061 /DEF=Caenorhabditis elegans cDNA clone:yk507d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075462 NCBI Caenorhabditis elegans Y60A3A.7 (Y60A3A.7) mRNA, complete cds. 11/11 A 
SNAP00000032804 ENSEMBL cdna:SNAP chromosome:CEL140:V:19956377:19956820:1 11/11 None
GENEFINDER00000032838 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19953494:19956820:1 11/11 None
Y60A3A.7 ENSEMBL cdna:known chromosome:CEL140:V:19953486:19956841:1 gene:Y60A3A.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19956523-19956830(+) 85.0 85.0
Public Domain and Genome References
Gene Title
Ensembl Y60A3A.7
Entrez Gene 180309 Entrez gene
SwissProt Q9U1Z6 EMBL-EBI
WormBase CE24531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15054_AT late embryogenesis abundant protein, putative / LEA protein, putative at
ATH1-121501:252132_AT late embryogenesis abundant protein, putative / LEA protein, putative at
CANINE:1604780_AT similar to alpha/beta hydrolase domain containing protein 3 cfa
CANINE_2:CFAAFFX.27934.1.S1_S_AT similar to alpha/beta hydrolase domain containing protein 3 cfa
DROSGENOME1:153239_AT dm
DROSOPHILA_2:1630623_A_AT dm
CHICKEN:GGAAFFX.9485.1.S1_AT similar to lung alpha/beta hydrolase fold protein 3 gga
U133_X3P:HS.13377.0.S1_3P_AT abhydrolase domain containing 3 hs
HG-U133A_2:213017_AT abhydrolase domain containing 3 hs
HG-U133_PLUS_2:213017_AT abhydrolase domain containing 3 hs
HG-U133A:213017_AT abhydrolase domain containing 3 hs
HG-U95AV2:41857_R_AT abhydrolase domain containing 3 hs
HG-U95D:78769_R_AT Abhydrolase domain containing 3 hs
HG-U133_PLUS_2:241940_AT Abhydrolase domain containing 3 hs
HG-U133B:241940_AT Abhydrolase domain containing 3 hs
HG-U95D:87121_AT Abhydrolase domain containing 3 hs
HU35KSUBB:RC_T50387_AT Abhydrolase domain containing 3 hs
U133_X3P:HS.188270.0.A1_3P_AT Abhydrolase domain containing 3 hs
MOE430A:1417946_AT abhydrolase domain containing 3 mm
MOUSE430A_2:1417946_AT abhydrolase domain containing 3 mm
MOUSE430_2:1417946_AT abhydrolase domain containing 3 mm
MU19KSUBA:TC20619_AT Abhydrolase domain containing 3, mRNA (cDNA clone MGC:30497 IMAGE:4234600) mm
MU11KSUBA:AA675331_RC_AT Abhydrolase domain containing 3, mRNA (cDNA clone MGC:30497 IMAGE:4234600) mm
RG-U34C:RC_AI227905_AT abhydrolase domain containing 3 (predicted) rn
RAE230B:1382137_AT abhydrolase domain containing 3 (predicted) rn
RAT230_2:1382137_AT abhydrolase domain containing 3 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60395 Hypothetical protein Y60A3A.7 [Caenorhabditis elegans] ref|NP_507863.1| Y60A3A.7 [Caenorhabditis elegans] 0.0
blast AAA82365 Hypothetical protein C44C1.5a [Caenorhabditis elegans] ref|NP_001024458.1| C44C1.5a [Caenorhabditis elegans] sp|Q18610|YYC5_CAEEL Hypothetical UPF0017 protein C44C1.5 in chromosome X 1.0E-171
blast CAE63589 Hypothetical protein CBG08080 [Caenorhabditis briggsae] 1.0E-167
blast CAB60395 Hypothetical protein Y60A3A.7 [Caenorhabditis elegans] ref|NP_507863.1| Y60A3A.7 [Caenorhabditis elegans] 3.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507863.1 1 2-24
Y60A3A.7 1 2-24
GENEFINDER00000032838 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:173192_S_AT
tcgctggccactaaagtcgccaagatcaaggttccgtgtgtcactctgaactcntacgac
gactacttcagccttattgaatgcatcccaacggcggatatcatgcaaagtgatcatgtc
gtcggaattatcactaaccatggaggacacactgcttttatggagtctgccgatccaaat
gctcgtggattggtggagaagctgctctcacaatggggaaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGGCCACTAAAGTCGCCAAGA 677 597 57 Antisense
TCGCCAAGATCAAGGTTCCGTGTGT 234 599 73 Antisense
AAGGTTCCGTGTGTCACTCTGAACT 157 161 84 Antisense
GAATGCATCCCAACGGCGGATATCA 401 329 135 Antisense
GCAAAGTGATCATGTCGTCGGAATT 153 319 161 Antisense
GTCGTCGGAATTATCACTAACCATG 263 473 174 Antisense
ACTAACCATGGAGGACACACTGCTT 612 99 189 Antisense
GACACACTGCTTTTATGGAGTCTGC 129 367 202 Antisense
GTCTGCCGATCCAAATGCTCGTGGA 40 471 221 Antisense
GGATTGGTGGAGAAGCTGCTCTCAC 571 507 243 Antisense
GAAGCTGCTCTCACAATGGGGAAAT 656 341 254 Antisense
Sequence Source Affymetrix Proprietary Database