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[173191_at]

Description AV200946_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200946 /DEF=Caenorhabditis elegans cDNA clone:yk583f11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 93      4grp_high_8_8 > 61      6grp_total > 94      4grp_total > 56      6grp_cgc > 89      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 100.2
(-0.8)
P 		115.3
(0.4)
P 		151.4
(3)
P 		69.6
(-3)
A 		82
B 89.2
(0.5)
P 		115.1
(3)
P 		104.9
(2)
P 		53.4
(-3)
P 		62
C 106.8
(-1.3)
P 		117.1
(-0.5)
M 		161.9
(3)
P 		84.4
(-3)
A 		78
avr 98.7
(-0.5) 		115.8
(1) 		139.4
(3) 		69.1
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 119.5
(-0.4)
P 		79.3
(-2.3)
A 		64.2
(-3)
P 		84.1
(-2)
A 		189.5
(3)
P 		104
(-1.1)
P 		125
B 142.6
(-1.4)
P 		99.9
(-3)
P 		125.2
(-2)
P 		161.3
(-0.7)
P 		256.7
(3)
P 		210.3
(1.2)
P 		157
C 64.2
(-1.9)
A 		130.9
(1.8)
P 		45.2
(-3)
A 		99.1
(0)
A 		92
(-0.4)
P 		151.3
(3)
P 		106
avr 108.8
(-1.2) 		103.4
(-1.5) 		78.2
(-3) 		114.8
(-0.8) 		179.4
(3) 		155.2
(1.6) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 36.5
(2.4)
P 		25
(0)
P 		39.6
(3)
P 		10.2
(-3)
A 		29
B 28.4
(3)
P 		28.4
(3)
P 		24.3
(1.6)
P 		11.4
(-3)
P 		17
C 35.4
(0)
P 		33.7
(-0.2)
M 		56.4
(3)
P 		14.2
(-3)
A 		42
avr 33.4
(1.6) 		29
(0.6) 		40.1
(3) 		11.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 22
(-1.9)
P 		28.2
(-1)
A 		14
(-3)
P 		21.3
(-2)
A 		57.2
(3)
P 		25.3
(-1.4)
P 		43
B 49.6
(-1.4)
P 		33.2
(-2.8)
P 		30.4
(-3)
P 		42.7
(-2)
P 		104.3
(3)
P 		78.4
(0.9)
P 		74
C 23.8
(-1.1)
A 		39.9
(1.3)
P 		11.5
(-3)
A 		19.9
(-1.7)
A 		29.8
(-0.2)
P 		50.7
(3)
P 		39
avr 31.8
(-1.2) 		33.8
(-1) 		18.6
(-3) 		28
(-1.8) 		63.8
(3) 		51.5
(1.4) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27027
Sequence Type Exemplar sequence
Representative Public ID AV200946 NCBI
Target Description AV200946_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200946 /DEF=Caenorhabditis elegans cDNA clone:yk583f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200946
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200946 AV200946_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200946 /DEF=Caenorhabditis elegans cDNA clone:yk583f11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060775 11/11 Negative Strand Matching Probes A 
SNAP00000003929 9/11 Negative Strand Matching Probes None
GENEFINDER00000003951 11/11 Negative Strand Matching Probes None
W02D9.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12539376-12540146(+) 98.67 98.67
Sequence
Target Sequence 
>C. ELEGANS:173191_AT
gagcttagttccatcgcataatttccgaaatttatccttgaactcatcgttatacaacga
aacactatccttgagattttcaaagcttttcagcaatttcagccgttccatggcgatatc
gtcgaactctgtgagcgaaatatcatctcctggtggcgtctgatacaattgaaggtattc
tggaatttccgctgctttcgtgggagctgtctttatactttgccgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTAGTTCCATCGCATAATTTC 673 385 52 Antisense
GAAATTTATCCTTGAACTCATCGTT 316 363 78 Antisense
ACAACGAAACACTATCCTTGAGATT 202 111 105 Antisense
GCTTTTCAGCAATTTCAGCCGTTCC 27 305 136 Antisense
CAGCCGTTCCATGGCGATATCGTCG 113 203 151 Antisense
GATATCGTCGAACTCTGTGAGCGAA 425 425 166 Antisense
CGAAATATCATCTCCTGGTGGCGTC 373 251 187 Antisense
CTCCTGGTGGCGTCTGATACAATTG 425 231 198 Antisense
GTATTCTGGAATTTCCGCTGCTTTC 416 453 226 Antisense
CTGCTTTCGTGGGAGCTGTCTTTAT 389 237 243 Antisense
AGCTGTCTTTATACTTTGCCGATTC 462 79 256 Antisense
Sequence Source Affymetrix Proprietary Database