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[173187_s_at]

Description AV181406_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181406 /DEF=Caenorhabditis elegans cDNA clone:yk619h9 : 3prime end, single read.
Cluster 4grp_high_8_8 > 53      6grp_total > 79      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 224.2
(-0.7)
P 		346.6
(3)
P 		336.3
(2.7)
P 		146.1
(-3)
A 		201
B 232.1
(0.5)
P 		271.5
(2.4)
M 		285
(3)
P 		159
(-3)
P 		126
C 249.3
(1)
P 		271.6
(2.1)
P 		288.9
(3)
P 		169.1
(-3)
A 		120
avr 235.2
(0.2) 		296.6
(2.7) 		303.4
(3) 		158.1
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 275.8
(3)
M 		268.1
(2.6)
P 		201.9
(-0.7)
P 		155.6
(-3)
M 		248.2
(1.6)
P 		262.1
(2.3)
P 		120
B 242.5
(-1.3)
P 		264.1
(-0.6)
P 		296.2
(0.4)
P 		188.5
(-3)
A 		298.1
(0.5)
P 		378.3
(3)
P 		190
C 243.4
(-0.9)
P 		297.3
(1)
P 		200.9
(-2.3)
A 		180.3
(-3)
A 		217.3
(-1.7)
P 		357.6
(3)
P 		177
avr 253.9
(0) 		276.5
(0.9) 		233
(-0.8) 		174.8
(-3) 		254.5
(0) 		332.7
(3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 81.6
(2.4)
P 		75.2
(1.9)
P 		87.9
(3)
P 		21.4
(-3)
A 		67
B 74
(3)
P 		67.1
(2)
M 		66.1
(1.8)
P 		33.9
(-3)
P 		40
C 82.5
(1.5)
P 		78.1
(1.1)
P 		100.7
(3)
P 		28.5
(-3)
A 		72
avr 79.4
(2.4) 		73.5
(1.8) 		84.9
(3) 		27.9
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 50.8
(-1.8)
M 		95.3
(3)
P 		44
(-2.5)
P 		39.5
(-3)
M 		74.9
(0.8)
P 		63.8
(-0.4)
P 		56
B 84.4
(-0.7)
P 		87.9
(-0.5)
P 		71.9
(-1.6)
P 		49.9
(-3)
A 		121.1
(1.7)
P 		141.1
(3)
P 		91
C 90.2
(0.9)
P 		90.7
(0.9)
P 		51.1
(-1.9)
A 		36.3
(-3)
A 		70.3
(-0.6)
P 		119.7
(3)
P 		83
avr 75.1
(0) 		91.3
(1.5) 		55.7
(-1.8) 		41.9
(-3) 		88.8
(1.2) 		108.2
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173187_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26730
Sequence Type Exemplar sequence
Representative Public ID AV181406 NCBI
Target Description AV181406_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181406 /DEF=Caenorhabditis elegans cDNA clone:yk619h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075225(11), NM_075224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075225 NCBI Caenorhabditis elegans Y51A2D.7a (Y51A2D.7) mRNA, complete cds. 11/11 A 
NM_075224 NCBI Caenorhabditis elegans Y51A2D.7b (Y51A2D.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000034279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18536538:18551599:1 10/11 None
Y51A2D.7a ENSEMBL cdna:known chromosome:CEL140:V:18540115:18551617:1 gene:Y51A2D.7 11/11 A 
Y51A2D.7b ENSEMBL cdna:known chromosome:CEL140:V:18540115:18551599:1 gene:Y51A2D.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18550319-18551570(+) 85.0 85.0
Public Domain and Genome References
Ensembl Y51A2D.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16406 Hypothetical protein Y51A2D.7a [Caenorhabditis elegans] ref|NP_507626.2| Y51A2D.7a [Caenorhabditis elegans] 0.0
blast CAA16410 Hypothetical protein Y51A2D.7b [Caenorhabditis elegans] ref|NP_507625.2| Y51A2D.7b [Caenorhabditis elegans] 0.0
blast CAA16406 Hypothetical protein Y51A2D.7a [Caenorhabditis elegans] ref|NP_507626.2| Y51A2D.7a [Caenorhabditis elegans] 1.0E-169
blast CAE67435 Hypothetical protein CBG12925 [Caenorhabditis briggsae] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:173187_S_AT
ggaacaattctccacgtgtcatgagacacatttgatgctcgtcgagatttggcgattttt
tgtggtccgtcagctaaataccgccacaatcgacacatatcacatggaaattctacgcgg
tgacgttgacgagggcctgcccgccgaaaaagaatcaatcgataaaatcaatacttctgt
ctttagaattatcattcaaaatcatttgcccgactcggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAATTCTCCACGTGTCATGAG 222 529 15 Antisense
GAGACACATTTGATGCTCGTCGAGA 415 393 37 Antisense
CTCGTCGAGATTTGGCGATTTTTTG 329 233 52 Antisense
CGATTTTTTGTGGTCCGTCAGCTAA 504 245 67 Antisense
TCCGTCAGCTAAATACCGCCACAAT 222 593 80 Antisense
CGCCACAATCGACACATATCACATG 558 257 96 Antisense
ACATGGAAATTCTACGCGGTGACGT 348 105 116 Antisense
TACGCGGTGACGTTGACGAGGGCCT 411 649 128 Antisense
GCCTGCCCGCCGAAAAAGAATCAAT 5 279 149 Antisense
TAAAATCAATACTTCTGTCTTTAGA 532 637 177 Antisense
TCAAAATCATTTGCCCGACTCGGCC 631 629 210 Antisense
Sequence Source Affymetrix Proprietary Database