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[173185_s_at]

Description AV179207_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV179207 /DEF=Caenorhabditis elegans cDNA clone:yk589e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 61      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 449.5
(1.9)
P 		431.8
(1.1)
P 		474.8
(3)
P 		341.8
(-3)
P 		133
B 512.8
(3)
P 		444.8
(-0.2)
P 		487.3
(1.8)
P 		386.6
(-3)
P 		126
C 439.6
(2.8)
P 		431.7
(2.3)
P 		443.4
(3)
P 		342.6
(-3)
P 		101
avr 467.3
(2.9) 		436.1
(1.3) 		468.5
(3) 		357
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1063
1 2 3 4 5 6 range
A 320.5
(-2.7)
P 		290.1
(-3)
P 		438.1
(-1.3)
P 		323.4
(-2.6)
P 		513.8
(-0.5)
P 		827.2
(3)
P 		537
B 345
(-3)
P 		490.7
(-1.5)
P 		521.6
(-1.2)
P 		458.4
(-1.8)
P 		532.9
(-1.1)
P 		930
(3)
P 		585
C 312.7
(-3)
P 		602.9
(-1.3)
P 		525.7
(-1.8)
P 		402.5
(-2.5)
P 		400.5
(-2.5)
P 		1352.7
(3)
P 		1040
avr 326.1
(-3) 		461.2
(-1.9) 		495.1
(-1.6) 		394.8
(-2.4) 		482.4
(-1.7) 		1036.6
(3) 		711
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 163.7
(3)
P 		93.7
(-0.7)
P 		124.1
(0.9)
P 		50
(-3)
P 		114
B 163.5
(3)
P 		109.9
(-1)
P 		112.9
(-0.7)
P 		82.4
(-3)
P 		81
C 145.5
(2.4)
P 		124.1
(1.1)
P 		154.5
(3)
P 		57.8
(-3)
P 		97
avr 157.6
(3) 		109.2
(-0.1) 		130.5
(1.3) 		63.4
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 59.1
(-3)
P 		103.2
(-1.1)
P 		95.4
(-1.5)
P 		82
(-2)
P 		155
(1)
P 		201.4
(3)
P 		142
B 120.1
(-3)
P 		163.3
(-1.9)
P 		126.7
(-2.8)
P 		121.4
(-3)
P 		216.5
(-0.4)
P 		346.8
(3)
P 		227
C 115.9
(-2.4)
P 		184
(-1.3)
P 		133.8
(-2.1)
P 		80.9
(-3)
P 		129.6
(-2.2)
P 		452.8
(3)
P 		372
avr 98.4
(-2.9) 		150.2
(-1.6) 		118.6
(-2.4) 		94.8
(-3) 		167
(-1.2) 		333.7
(3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173185_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26667
Sequence Type Exemplar sequence
Representative Public ID AV179207 NCBI
Target Description AV179207_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV179207 /DEF=Caenorhabditis elegans cDNA clone:yk589e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064076 NCBI Caenorhabditis elegans D1043.1 (D1043.1) mRNA, complete cds. 11/11 A 
SNAP00000044548 ENSEMBL cdna:SNAP chromosome:CEL140:II:11585867:11588292:1 11/11 None
GENEFINDER00000044560 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11585867:11588292:1 11/11 None
D1043.1.2 ENSEMBL cdna:known chromosome:CEL140:II:11582751:11588375:1 gene:D1043.1 11/11 None
D1043.1.1 ENSEMBL cdna:known chromosome:CEL140:II:11582752:11588430:1 gene:D1043.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11587996-11588320(+) 92.33 92.33
Public Domain and Genome References
Gene Title
Ensembl D1043.1
Entrez Gene 174777 Entrez gene
SwissProt Q19134 EMBL-EBI
WormBase CE32842 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18978.1.S1_AT similar to DKFZP434B168 protein cfa
CANINE_2:CFAAFFX.19002.1.S1_S_AT similar to DKFZP434B168 protein cfa
DROSOPHILA_2:1641246_AT deflated dm
DROSGENOME1:152377_AT deflated dm
CHICKEN:GGAAFFX.11946.1.S1_S_AT similar to DKFZP434B168 protein gga
HG-U133_PLUS_2:218783_AT chromosome 1 open reading frame 73 hs
HG-U133A:218783_AT chromosome 1 open reading frame 73 hs
HG-U133A_2:218783_AT chromosome 1 open reading frame 73 hs
HG-U133_PLUS_2:222250_S_AT chromosome 1 open reading frame 73 hs
HG-U133A_2:222250_S_AT chromosome 1 open reading frame 73 hs
HG-U133A:222250_S_AT chromosome 1 open reading frame 73 hs
HU35KSUBA:HUM_ALU_AT chromosome 1 open reading frame 73 hs
HU35KSUBB:HUM_ALU_AT chromosome 1 open reading frame 73 hs
HU35KSUBC:HUM_ALU_AT chromosome 1 open reading frame 73 hs
HU35KSUBD:HUM_ALU_AT chromosome 1 open reading frame 73 hs
HUGENEFL:HUM_ALU_AT chromosome 1 open reading frame 73 hs
HC-G110:HUM_ALU_AT chromosome 1 open reading frame 73 hs
HU35KSUBC:RC_AA426060_AT chromosome 1 open reading frame 73 hs
U133_X3P:G6453464_3P_AT chromosome 1 open reading frame 73 hs
U133_X3P:HS2.385548.1.S1_3P_AT chromosome 1 open reading frame 73 hs
U133_X3P:HS.48604.1.S1_3P_X_AT chromosome 1 open reading frame 73 hs
U133_X3P:222250_3P_S_AT chromosome 1 open reading frame 73 hs
HG-U133_PLUS_2:1570173_AT chromosome 1 open reading frame 73 hs
HG-U95B:54201_AT chromosome 1 open reading frame 73 hs
HG-U95C:62172_AT chromosome 1 open reading frame 73 hs
HG-U133_PLUS_2:240266_AT Chromosome 1 open reading frame 73 hs
HG-U133B:240266_AT Chromosome 1 open reading frame 73 hs
HG-U95E:85518_AT Chromosome 1 open reading frame 73 hs
HU35KSUBC:RC_H69691_AT Chromosome 1 open reading frame 73 hs
U133_X3P:HS.188725.0.A1_3P_AT Chromosome 1 open reading frame 73 hs
MU11KSUBA:C79651_RC_AT RIKEN cDNA 5930412E23 gene mm
MG-U74AV2:100004_AT RIKEN cDNA 5930412E23 gene mm
MOE430A:1452822_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430A_2:1452822_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430_2:1452822_AT RIKEN cDNA 5930412E23 gene mm
MOE430A:1428531_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430A_2:1428531_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430_2:1428531_AT RIKEN cDNA 5930412E23 gene mm
MOE430A:1428532_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430A_2:1428532_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430_2:1428532_AT RIKEN cDNA 5930412E23 gene mm
MOUSE430_2:1443045_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
MOE430B:1443045_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
MOE430B:1458590_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
MOUSE430_2:1458590_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
MG-U74BV2:164313_F_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
MU19KSUBA:TC22043_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
MU19KSUBA:TC25422_AT RIKEN cDNA 5930412E23 gene, mRNA (cDNA clone MGC:59468 IMAGE:6506658) mm
RAE230B:1385105_AT similar to DKFZP434B168 protein (predicted) rn
RAT230_2:1385105_AT similar to DKFZP434B168 protein (predicted) rn
RAE230B:1379424_AT Similar to DKFZP434B168 protein (predicted) rn
RAT230_2:1379424_AT Similar to DKFZP434B168 protein (predicted) rn
RAE230B:1382093_AT Similar to DKFZP434B168 protein (predicted) rn
RAT230_2:1382093_AT Similar to DKFZP434B168 protein (predicted) rn
RAE230B:1393238_AT Similar to DKFZP434B168 protein (predicted) rn
RAT230_2:1393238_AT Similar to DKFZP434B168 protein (predicted) rn
RG-U34C:AA944109_AT Similar to DKFZP434B168 protein (predicted) rn
RG-U34B:RC_AA900649_AT Similar to DKFZP434B168 protein (predicted) rn
RG-U34C:RC_AI178038_AT Similar to DKFZP434B168 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA91319 Hypothetical protein D1043.1 [Caenorhabditis elegans] emb|CAB16919.2| Hypothetical protein D1043.1 [Caenorhabditis elegans] ref|NP_496477.2| D1043.1 [Caenorhabditis elegans] 0.0
blast CAE59469 Hypothetical protein CBG02853 [Caenorhabditis briggsae] 0.0
blast CAA91319 Hypothetical protein D1043.1 [Caenorhabditis elegans] emb|CAB16919.2| Hypothetical protein D1043.1 [Caenorhabditis elegans] ref|NP_496477.2| D1043.1 [Caenorhabditis elegans] 1.0E-180
blast CAA91319 Hypothetical protein D1043.1 [Caenorhabditis elegans] emb|CAB16919.2| Hypothetical protein D1043.1 [Caenorhabditis elegans] ref|NP_496477.2| D1043.1 [Caenorhabditis elegans] 1.0E-163
blast CAE59469 Hypothetical protein CBG02853 [Caenorhabditis briggsae] 1.0E-120
blast CAE59469 Hypothetical protein CBG02853 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:173185_S_AT
tgacgacacttcacttcacagttcgcgagaaatattcatcggtcggattcgagctgaaac
gagtcggacatcaatttccaccggatcccaggaggcactttccgaaaggatcgttgtttc
atgctgaggcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGACACTTCACTTCACAGTTCG 73 571 148 Antisense
ACTTCACTTCACAGTTCGCGAGAAA 308 103 155 Antisense
GTTCGCGAGAAATATTCATCGGTCG 645 441 168 Antisense
TATTCATCGGTCGGATTCGAGCTGA 448 661 180 Antisense
GGATTCGAGCTGAAACGAGTCGGAC 466 509 192 Antisense
CGAGTCGGACATCAATTTCCACCGG 540 249 207 Antisense
GTCGGACATCAATTTCCACCGGATC 131 471 210 Antisense
ATCCCAGGAGGCACTTTCCGAAAGG 98 37 232 Antisense
GGAGGCACTTTCCGAAAGGATCGTT 484 515 238 Antisense
AAGGATCGTTGTTTCATGCTGAGGC 196 161 253 Antisense
ATCGTTGTTTCATGCTGAGGCGTGA 483 35 257 Antisense
Sequence Source Affymetrix Proprietary Database