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[173184_at]

Description AV181294_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181294 /DEF=Caenorhabditis elegans cDNA clone:yk618d9 : 3prime end, single read.
Cluster 6grp_total > 40      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.7
(-3)
A 		4.8
(-0.4)
A 		4.6
(-0.6)
A 		7.5
(3)
A 		5
B 2.9
(-3)
A 		5
(0.2)
A 		6.9
(3)
A 		3.6
(-2)
A 		4
C 2.8
(-2)
A 		6.8
(3)
A 		2
(-3)
A 		4.3
(-0.1)
A 		5
avr 2.8
(-3) 		5.5
(3) 		4.5
(0.8) 		5.1
(2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.8
(-2.6)
A 		4.3
(3)
A 		4.1
(2.3)
A 		3.8
(1.1)
A 		2.7
(-3)
A 		3.8
(1.1)
A 		2
B 3
(-0.8)
A 		2.8
(-1.1)
A 		5.2
(3)
A 		4.5
(1.8)
A 		3.3
(-0.3)
A 		1.7
(-3)
A 		4
C 3.8
(1)
A 		3.3
(-0)
A 		1.8
(-3)
A 		2.4
(-1.8)
A 		2.9
(-0.8)
A 		4.8
(3)
A 		3
avr 3.2
(-1.3) 		3.5
(1.3) 		3.7
(3) 		3.6
(2.1) 		3
(-3) 		3.4
(0.4) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(-3)
A 		1
(-3)
A 		1.2
(3)
A 		1.1
(0)
A 		0
B 0.9
(-2.3)
A 		1.2
(-0)
A 		1.6
(3)
A 		0.8
(-3)
A 		1
C 0.9
(-2.1)
A 		2
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
avr 0.9
(-3) 		1.4
(3) 		1.2
(0.6) 		0.9
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.5
(3)
A 		0.9
(-0.6)
A 		1
(0)
A 		0.8
(-1.2)
A 		0.9
(-0.6)
A 		1
B 1
(0.4)
A 		0.9
(-0.4)
A 		1.3
(3)
A 		1.2
(2.1)
A 		1.3
(3)
A 		0.6
(-3)
A 		1
C 1.4
(1.9)
A 		1
(-0.3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
(-0.3)
A 		1.6
(3)
A 		1
avr 1
(-0) 		1.1
(3) 		0.9
(-3) 		0.9
(-3) 		1
(-0) 		1
(-0) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26724
Sequence Type Exemplar sequence
Representative Public ID AV181294 NCBI
Target Description AV181294_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181294 /DEF=Caenorhabditis elegans cDNA clone:yk618d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV181294
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV181294 AV181294_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181294 /DEF=Caenorhabditis elegans cDNA clone:yk618d9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:173184_AT
ggaagaactctagcatggcagcgatacgcgcgagtgtgcgtgtgtggctgaagccgtacg
gnancatgcgacactccccagagatgcgcgagtctgtacnatccggtgccagcatctgac
gcgcactcangctatgtctccctcccatcatgtgttggtaccagtctatgaatgat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAACTCTAGCATGGCAGCGAT 487 531 33 Antisense
CTCTAGCATGGCAGCGATACGCGCG 187 227 40 Antisense
GCATGGCAGCGATACGCGCGAGTGT 390 311 45 Antisense
GGCAGCGATACGCGCGAGTGTGCGT 152 537 49 Antisense
GATACGCGCGAGTGTGCGTGTGTGG 49 425 55 Antisense
GCGAGTGTGCGTGTGTGGCTGAAGC 404 289 62 Antisense
GTGCGTGTGTGGCTGAAGCCGTACG 613 477 68 Antisense
CTCCCCAGAGATGCGCGAGTCTGTA 192 235 106 Antisense
TCCCTCCCATCATGTGTTGGTACCA 22 599 171 Antisense
CTCCCATCATGTGTTGGTACCAGTC 275 233 174 Antisense
GTGTTGGTACCAGTCTATGAATGAT 265 485 184 Antisense
Sequence Source Affymetrix Proprietary Database