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[173177_s_at]

Description AV200354_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200354 /DEF=Caenorhabditis elegans cDNA clone:yk574a8 : 3prime end, single read.
Cluster 6grp_total > 57      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 65.9
(1)
A 		9.3
(-2.8)
A 		6.2
(-3)
A 		95.2
(3)
A 		89
B 54.4
(1.8)
A 		17.4
(-1.6)
A 		2.2
(-3)
A 		66.8
(3)
A 		65
C 49.7
(-0.4)
A 		9.2
(-2.7)
A 		4
(-3)
A 		111
(3)
A 		107
avr 56.7
(0.6) 		12
(-2.5) 		4.1
(-3) 		91
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 36.5
(0.8)
A 		23.2
(-1)
A 		29.3
(-0.2)
A 		7.3
(-3)
A 		15.1
(-2)
A 		54
(3)
A 		47
B 33.3
(0.4)
A 		2.5
(-3)
A 		36.1
(0.7)
A 		56.5
(3)
A 		30.1
(0.1)
A 		34.6
(0.6)
A 		54
C 31
(-0.3)
A 		41.3
(0.8)
A 		25.9
(-0.8)
A 		5.1
(-3)
A 		4.7
(-3)
A 		63
(3)
A 		58
avr 33.6
(0) 		22.3
(-2) 		30.4
(-0.6) 		23
(-1.9) 		16.6
(-3) 		50.5
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24
(3)
A 		2
(-2.9)
A 		1.6
(-3)
A 		13.9
(0.3)
A 		22
B 17.3
(3)
A 		4.3
(-1.6)
A 		0.5
(-3)
A 		14.2
(1.9)
A 		17
C 16.4
(2.2)
A 		2.7
(-2.5)
A 		1.4
(-3)
A 		18.7
(3)
A 		17
avr 19.2
(3) 		3
(-2.4) 		1.2
(-3) 		15.6
(1.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.7
(-0.4)
A 		8.3
(0.5)
A 		6.4
(-0.6)
A 		1.8
(-3)
A 		4.6
(-1.5)
A 		13.1
(3)
A 		11
B 11.6
(1.6)
A 		0.8
(-3)
A 		8.8
(0.4)
A 		15
(3)
A 		12.2
(1.8)
A 		12.9
(2.1)
A 		14
C 11.5
(0.1)
A 		12.6
(0.5)
A 		6.6
(-1.3)
A 		1
(-3)
A 		1.5
(-2.9)
A 		21.1
(3)
A 		20
avr 9.9
(-0.6) 		7.2
(-2.2) 		7.3
(-2.1) 		5.9
(-3) 		6.1
(-2.9) 		15.7
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173177_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26999
Sequence Type Exemplar sequence
Representative Public ID AV200354 NCBI
Target Description AV200354_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200354 /DEF=Caenorhabditis elegans cDNA clone:yk574a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074693 NCBI Caenorhabditis elegans F21H7.2 (F21H7.2) mRNA, complete cds. 11/11 A 
SNAP00000014721 ENSEMBL cdna:SNAP chromosome:CEL140:V:16230072:16232152:-1 11/11 None
GENEFINDER00000014736 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16230072:16232152:-1 11/11 None
F21H7.2.2 ENSEMBL cdna:known chromosome:CEL140:V:16229737:16232476:-1 gene:F21H7.2 11/11 A 
F21H7.2.1 ENSEMBL cdna:known chromosome:CEL140:V:16229737:16232181:-1 gene:F21H7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16231508-16232159(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21H7.2
Entrez Gene 180087 Entrez gene
SwissProt O45345 EMBL-EBI
WormBase CE15875 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07594 Hypothetical protein F21H7.2 [Caenorhabditis elegans] emb|CAB07364.1| Hypothetical protein F21H7.2 [Caenorhabditis elegans] ref|NP_507094.1| F21H7.2 [Caenorhabditis elegans] 0.0
blast CAE61592 Hypothetical protein CBG05506 [Caenorhabditis briggsae] 1.0E-39
blast CAE61592 Hypothetical protein CBG05506 [Caenorhabditis briggsae] 3.0E-38
Sequence
Target Sequence 
>C. ELEGANS:173177_S_AT
gtcgaagagaaatgtgcaccggtgcgtcgtggagctggacccccgaagaacgtgnccgct
ccgcttccaattgaattgaagccaaagtttccgaaaactgaggaatccnccgttccagct
gaacttgcacatacaccacagacacctgtggagcaggttccggccgcacagtctgcaata
gttgaagcaccggtagtttccaagactttggagacggagattaatg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAAGAGAAATGTGCACCGGTGC 558 473 47 Antisense
AGAAATGTGCACCGGTGCGTCGTGG 275 73 54 Antisense
CGCTCCGCTTCCAATTGAATTGAAG 694 255 103 Antisense
TGAATTGAAGCCAAAGTTTCCGAAA 221 571 118 Antisense
GTTCCAGCTGAACTTGCACATACAC 403 441 158 Antisense
TGAACTTGCACATACACCACAGACA 336 573 166 Antisense
GACACCTGTGGAGCAGGTTCCGGCC 505 363 187 Antisense
CGGCCGCACAGTCTGCAATAGTTGA 59 241 207 Antisense
GCAATAGTTGAAGCACCGGTAGTTT 251 317 221 Antisense
GCACCGGTAGTTTCCAAGACTTTGG 528 315 233 Antisense
AAGACTTTGGAGACGGAGATTAATG 500 153 248 Antisense
Sequence Source Affymetrix Proprietary Database