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[173175_s_at]

Description AV198951_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV198951 /DEF=Caenorhabditis elegans cDNA clone:yk405h7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 33      6grp_total > 11      4grp_total > 59      6grp_cgc > 63      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 174.1
(0.1)
P 		147.3
(-1.3)
P 		231.7
(3)
P 		113.9
(-3)
A 		118
B 181.7
(1.3)
P 		226
(3)
P 		173.3
(0.9)
P 		73
(-3)
A 		153
C 158.1
(-0.2)
P 		192.6
(2.1)
P 		207.1
(3)
P 		114.6
(-3)
A 		93
avr 171.3
(1.1) 		188.6
(2.1) 		204
(3) 		100.5
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 178.2
(-1.1)
P 		331.2
(3)
P 		247.4
(0.8)
P 		211.1
(-0.2)
P 		250.8
(0.9)
P 		106.5
(-3)
M 		225
B 225.6
(-0.3)
P 		343.3
(3)
P 		253.7
(0.5)
P 		268.1
(0.9)
P 		197.1
(-1.1)
P 		127.6
(-3)
P 		216
C 194.5
(-3)
P 		321.1
(3)
P 		204.7
(-2.5)
P 		281.6
(1.1)
P 		231.3
(-1.3)
P 		217.2
(-1.9)
P 		127
avr 199.4
(-1.4) 		331.9
(3) 		235.3
(-0.2) 		253.6
(0.4) 		226.4
(-0.5) 		150.4
(-3) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 63.4
(3)
P 		32
(-1)
P 		60.6
(2.6)
P 		16.7
(-3)
A 		47
B 58
(3)
P 		55.8
(2.7)
P 		40.2
(0.5)
P 		15.6
(-3)
A 		42
C 52.3
(0.7)
P 		55.4
(1.1)
P 		72.2
(3)
P 		19.3
(-3)
A 		53
avr 57.9
(3) 		47.7
(1.5) 		57.7
(3) 		17.2
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 32.8
(-2.5)
P 		117.8
(3)
P 		53.9
(-1.2)
P 		53.5
(-1.2)
P 		75.7
(0.3)
P 		25.9
(-3)
M 		92
B 78.5
(-0.2)
P 		114.3
(3)
P 		61.6
(-1.7)
P 		71
(-0.9)
P 		80.1
(-0.1)
P 		47.6
(-3)
P 		67
C 72.1
(-0.4)
P 		98
(3)
P 		52.1
(-3)
P 		56.6
(-2.4)
P 		74.8
(-0)
P 		72.7
(-0.3)
P 		46
avr 61.1
(-1.8) 		110
(3) 		55.9
(-2.3) 		60.4
(-1.9) 		76.9
(-0.2) 		48.7
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173175_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26935
Sequence Type Exemplar sequence
Representative Public ID AV198951 NCBI
Target Description AV198951_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV198951 /DEF=Caenorhabditis elegans cDNA clone:yk405h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066620 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-11) (ced-11) mRNA, complete cds. 11/11 A 
SNAP00000002529 ENSEMBL cdna:SNAP chromosome:CEL140:III:9119465:9124958:1 11/11 None
ZK512.3 ENSEMBL cdna:known chromosome:CEL140:III:9119465:9125059:1 gene:ZK512.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002546 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9124725-9124989(+) 88.0 88.0
Public Domain and Genome References
Gene Title
Gene Symbol ced-11
Ensembl ZK512.3
Entrez Gene 176288 Entrez gene
SwissProt P34641 EMBL-EBI
WormBase CE00409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80145 Hypothetical protein ZK512.3 [Caenorhabditis elegans] ref|NP_499021.1| CEll Death abnormality family member (ced-11) [Caenorhabditis elegans] sp|P34641|CED11_CAEEL Ced-11 protein 0.0
blast CAE62770 Hypothetical protein CBG06939 [Caenorhabditis briggsae] 0.0
blast CAC81659 putative TRP homologous cation channel protein [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499021.1 6 621-643,755-777,821-843,856-876,896-918,981-1003
ZK512.3 6 621-643,755-777,821-843,856-876,896-918,981-1003
SNAP00000002529 6 621-643,755-777,821-843,856-876,896-918,981-1003
Sequence
Target Sequence 
>C. ELEGANS:173175_S_AT
atccaatgacacgagtcctgctcatttggcttcagaagttgcagaaaatgaaaacgatac
agacaacgcgtggacggagcatgatgtttgggctatttctctccgagaacgacgtataat
aaccacaattatcggttattcgtggcttcctacgagtgcaattcgtggaacagtgcttcc
atggcaagcagatcttgttttccgagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAATGACACGAGTCCTGCTCAT 292 41 48 Antisense
AGTCCTGCTCATTTGGCTTCAGAAG 59 61 61 Antisense
GATACAGACAACGCGTGGACGGAGC 554 423 103 Antisense
ACGCGTGGACGGAGCATGATGTTTG 533 91 113 Antisense
TGATGTTTGGGCTATTTCTCTCCGA 181 567 129 Antisense
TTTCTCTCCGAGAACGACGTATAAT 123 671 143 Antisense
AATTATCGGTTATTCGTGGCTTCCT 594 173 174 Antisense
GTGGCTTCCTACGAGTGCAATTCGT 606 491 189 Antisense
GTGCAATTCGTGGAACAGTGCTTCC 542 481 203 Antisense
ACAGTGCTTCCATGGCAAGCAGATC 266 107 217 Antisense
CAAGCAGATCTTGTTTTCCGAGCAA 578 185 232 Antisense
Sequence Source Affymetrix Proprietary Database