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[173174_s_at]

Description AV177803_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV177803 /DEF=Caenorhabditis elegans cDNA clone:yk534a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 09      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 71      6grp_total > 04      4grp_total > 12      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 409.3
(0.3)
P 		314.9
(-1.7)
P 		252.6
(-3)
P 		534.9
(3)
P 		282
B 398.7
(-1.2)
P 		375.1
(-1.5)
P 		265.9
(-3)
P 		697.4
(3)
P 		432
C 366.1
(-2)
P 		359.7
(-2.1)
P 		299.1
(-3)
P 		716.5
(3)
P 		417
avr 391.4
(-1.1) 		349.9
(-1.8) 		272.5
(-3) 		649.6
(3) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 360.3
(3)
P 		310.7
(1.4)
P 		280.4
(0.3)
P 		317.4
(1.6)
P 		303
(1.1)
P 		179.4
(-3)
P 		181
B 426.1
(3)
P 		344.7
(0.1)
P 		346.9
(0.2)
P 		302.4
(-1.3)
P 		415.5
(2.6)
P 		255.3
(-3)
P 		171
C 327.6
(2.4)
P 		345.5
(3)
P 		311.7
(1.9)
P 		292.8
(1.3)
P 		306.2
(1.7)
P 		160.2
(-3)
P 		185
avr 371.3
(3) 		333.6
(1.7) 		313
(1) 		304.2
(0.7) 		341.6
(2) 		198.3
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 149
(3)
P 		68.4
(-2.8)
P 		66
(-3)
P 		78.3
(-2.1)
P 		83
B 127.2
(1.5)
P 		92.7
(-0.9)
P 		61.6
(-3)
P 		148.6
(3)
P 		87
C 121.2
(3)
P 		103.4
(-3)
P 		104.2
(-2.7)
P 		120.8
(2.9)
P 		18
avr 132.5
(3) 		88.2
(-1.8) 		77.3
(-3) 		115.9
(1.2) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 66.4
(-1)
P 		110.5
(3)
P 		61.1
(-1.4)
P 		80.5
(0.3)
P 		91.4
(1.3)
P 		43.7
(-3)
P 		67
B 148.3
(1.6)
P 		114.7
(-0.7)
P 		84.2
(-2.7)
P 		80.1
(-3)
P 		168.8
(3)
P 		95.2
(-2)
P 		89
C 121.4
(3)
P 		105.4
(1.6)
P 		79.3
(-0.7)
P 		58.9
(-2.5)
P 		99.1
(1)
P 		53.6
(-3)
P 		68
avr 112
(2.2) 		110.2
(2) 		74.9
(-1.8) 		73.2
(-2) 		119.8
(3) 		64.2
(-3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173174_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27064
Sequence Type Exemplar sequence
Representative Public ID AV177803 NCBI
Target Description AV177803_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV177803 /DEF=Caenorhabditis elegans cDNA clone:yk534a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027467 NCBI Caenorhabditis elegans H06I04.6 (H06I04.6) mRNA, complete cds. 11/11 None
SNAP00000025108 ENSEMBL cdna:SNAP chromosome:CEL140:III:3061757:3062823:-1 11/11 None
H06I04.6 ENSEMBL cdna:known chromosome:CEL140:III:3061194:3063292:-1 gene:H06I04.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025126 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3061244-3062386(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H06I04.6
Entrez Gene 175412 Entrez gene
SwissProt Q65XY5 EMBL-EBI
WormBase CE37386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU20844 Hypothetical protein H06I04.6 [Caenorhabditis elegans] ref|NP_001022638.1| H06I04.6 [Caenorhabditis elegans] 3.0E-55
blast CAE74679 Hypothetical protein CBG22489 [Caenorhabditis briggsae] 2.0E-22
blast CAI06056 Hypothetical protein C07A9.12 [Caenorhabditis elegans] ref|NP_001021155.1| C07A9.12 [Caenorhabditis elegans] sp|Q5CZ51|YKT2_CAEEL Hypothetical protein C07A9.12 in chromosome III 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 5.2E-19
Sequence
Target Sequence 
>C. ELEGANS:173174_S_AT
gtcgaatgccgattgagtcaggagatcaacaatttggaaatgtttatttccaggacaact
cccgaccgcgagagattacatggggctgcggatactacgagtattgctgcggctacgagt
gctgtcgaggcggtggagcaacatcggatcgaatcggcggacgcggaacgtcacttgggt
acgcgttggtcatcggtttcttggctagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAATGCCGATTGAGTCAGGAGA 673 473 13 Antisense
TGTTTATTTCCAGGACAACTCCCGA 371 559 53 Antisense
CAACTCCCGACCGCGAGAGATTACA 69 187 68 Antisense
ATGGGGCTGCGGATACTACGAGTAT 134 49 92 Antisense
CTACGAGTATTGCTGCGGCTACGAG 294 225 107 Antisense
CTACGAGTGCTGTCGAGGCGGTGGA 407 17 125 Antisense
GCGGTGGAGCAACATCGGATCGAAT 246 291 142 Antisense
TCGGATCGAATCGGCGGACGCGGAA 425 605 156 Antisense
GACGCGGAACGTCACTTGGGTACGC 293 381 172 Antisense
TCACTTGGGTACGCGTTGGTCATCG 252 591 183 Antisense
GGTCATCGGTTTCTTGGCTAGACGA 295 501 200 Antisense
Sequence Source Affymetrix Proprietary Database