[Home] | [Total List]

[173173_at]

Description AV198661_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV198661 /DEF=Caenorhabditis elegans cDNA clone:yk275d11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 63      4grp_high_8_8 > 44      6grp_total > 64      4grp_total > 51      6grp_high1_sub > 03      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 114.5
(1.2)
P 		146
(3)
P 		121.1
(1.6)
P 		42.9
(-3)
A 		103
B 124.7
(-0)
P 		150.6
(3)
P 		114.2
(-1.2)
P 		99.2
(-3)
P 		51
C 126.5
(1.3)
P 		145.6
(3)
P 		135.3
(2.1)
P 		77.7
(-3)
A 		68
avr 121.9
(0.9) 		147.4
(3) 		123.5
(1.1) 		73.3
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 58.1
(-2.3)
P 		107.8
(1.6)
P 		125.9
(3)
P 		49.4
(-3)
M 		77.8
(-0.8)
P 		63.1
(-1.9)
A 		77
B 94.5
(0.2)
P 		96.6
(0.5)
P 		116.6
(3)
P 		102.3
(1.2)
P 		69.5
(-3)
P 		99.9
(0.9)
P 		47
C 39.3
(-2.6)
P 		87.7
(0.1)
P 		54.5
(-1.8)
A 		139.3
(3)
P 		33.1
(-3)
A 		98.4
(0.7)
P 		106
avr 64
(-2.4) 		97.4
(2.8) 		99
(3) 		97
(2.7) 		60.1
(-3) 		87.1
(1.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 41.7
(3)
P 		31.7
(1.3)
P 		31.7
(1.3)
P 		6.3
(-3)
A 		35
B 39.8
(3)
P 		37.2
(2.2)
P 		26.5
(-1.3)
P 		21.1
(-3)
P 		19
C 41.9
(2.1)
P 		41.9
(2.1)
P 		47.2
(3)
P 		13.1
(-3)
A 		34
avr 41.1
(3) 		36.9
(2.1) 		35.1
(1.7) 		13.5
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.7
(-3)
P 		38.3
(3)
P 		27.4
(0.6)
P 		12.5
(-2.6)
M 		23.5
(-0.2)
P 		15.4
(-2)
A 		28
B 32.9
(0.4)
P 		32.2
(0)
P 		28.3
(-2.3)
P 		27.1
(-3)
P 		28.3
(-2.3)
P 		37.3
(3)
P 		10
C 14.6
(-1.9)
P 		26.8
(1.4)
P 		13.9
(-2.1)
A 		28
(1.7)
P 		10.7
(-3)
A 		32.9
(3)
P 		22
avr 19.4
(-3) 		32.4
(3) 		23.2
(-1.2) 		22.5
(-1.6) 		20.8
(-2.4) 		28.5
(1.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26924
Sequence Type Exemplar sequence
Representative Public ID AV198661 NCBI
Target Description AV198661_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV198661 /DEF=Caenorhabditis elegans cDNA clone:yk275d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004676 ENSEMBL cdna:SNAP chromosome:CEL140:II:11572470:11577091:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064072 11/11 Negative Strand Matching Probes A 
SNAP00000004675 11/11 Negative Strand Matching Probes None
GENEFINDER00000004689 11/11 Negative Strand Matching Probes None
F54D5.3.2 11/11 Negative Strand Matching Probes None
F54D5.3.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11571744-11572552(-) 99.0 99.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91338 Hypothetical protein F54D5.1 [Caenorhabditis elegans] ref|NP_496475.3| PhytoChelatin Synthase family member (pcs-1) [Caenorhabditis elegans] gb|AAK62992.1| phytochelatin synthase [Caenorhabditis elegans] gb|AAK62991.1| phytochelatin synthase [Caenorhabditis elegans] 1.0E-169
blast CAE59471 Hypothetical protein CBG02855 [Caenorhabditis briggsae] 1.0E-146
blast XP_635353 hypothetical protein DDB0219651 [Dictyostelium discoideum] gb|EAL61877.1| hypothetical protein DDB0219651 [Dictyostelium discoideum] 5.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR007719 EMBL-EBI Phytochelatin synthase 1.5E-41
Pfam IPR007719 EMBL-EBI Phytochelatin synthase 1.6E-38
Sequence
Target Sequence 
>C. ELEGANS:173173_AT
gagacaatatccttaactgggcgagttctctcgagcatagttgcattagttccggccaac
agaatcttatagttttgaagagcagttccagtattcaagcatccttcgaagcagtagtat
ttggtgttaagcttagatcctccatacgagtaatcagtaactccttcggcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACAATATCCTTAACTGGGCGAG 408 393 85 Antisense
AACTGGGCGAGTTCTCTCGAGCATA 208 143 99 Antisense
GCGAGTTCTCTCGAGCATAGTTGCA 474 289 105 Antisense
GCATAGTTGCATTAGTTCCGGCCAA 301 307 119 Antisense
GTTCCGGCCAACAGAATCTTATAGT 114 439 133 Antisense
TGAAGAGCAGTTCCAGTATTCAAGC 349 575 160 Antisense
GTATTCAAGCATCCTTCGAAGCAGT 394 453 175 Antisense
GAAGCAGTAGTATTTGGTGTTAAGC 382 341 192 Antisense
GGTGTTAAGCTTAGATCCTCCATAC 542 499 207 Antisense
TAGATCCTCCATACGAGTAATCAGT 342 653 218 Antisense
AGTAATCAGTAACTCCTTCGGCAAG 683 61 233 Antisense
Sequence Source Affymetrix Proprietary Database