[Home] | [Total List]

[173170_s_at]

Description AV182538_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182538 /DEF=Caenorhabditis elegans cDNA clone:yk639d11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 68      4grp_high_8_8 > 05      6grp_total > 68      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 87.9
(-0.7)
P 		52.7
(-2.3)
A 		37.3
(-3)
A 		171.4
(3)
P 		134
B 102.1
(2.5)
P 		64.3
(-1.3)
P 		47
(-3)
A 		106.8
(3)
P 		60
C 84.2
(-2.5)
P 		85.5
(-2.5)
P 		75.7
(-3)
P 		186.7
(3)
P 		111
avr 91.4
(-0.8) 		67.5
(-2.2) 		53.3
(-3) 		155
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 82.5
(-2.8)
P 		107.1
(-1.6)
P 		94.1
(-2.2)
P 		77.4
(-3)
P 		116.6
(-1.1)
P 		201.9
(3)
P 		125
B 122.2
(-1.6)
P 		125.6
(-1.5)
P 		69.6
(-3)
P 		76.5
(-2.8)
P 		125.4
(-1.5)
P 		293.2
(3)
P 		224
C 125.4
(-0.9)
P 		126.1
(-0.9)
P 		51.2
(-3)
A 		86.2
(-2)
P 		140.4
(-0.5)
P 		261.1
(3)
P 		210
avr 110
(-1.7) 		119.6
(-1.4) 		71.6
(-3) 		80
(-2.7) 		127.5
(-1.1) 		252.1
(3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 32
(3)
P 		11.4
(-2.5)
A 		9.7
(-3)
A 		25.1
(1.1)
P 		22
B 32.6
(3)
P 		15.9
(-1.6)
P 		10.9
(-3)
A 		22.8
(0.3)
P 		22
C 27.9
(-0.1)
P 		24.6
(-3)
P 		26.4
(-1.4)
P 		31.5
(3)
P 		7
avr 30.8
(3) 		17.3
(-2.4) 		15.7
(-3) 		26.5
(1.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 15.2
(-3)
P 		38.1
(1)
P 		20.5
(-2.1)
P 		19.6
(-2.2)
P 		35.2
(0.5)
P 		49.2
(3)
P 		34
B 42.5
(-1.3)
P 		41.8
(-1.4)
P 		16.9
(-3)
P 		20.3
(-2.8)
P 		50.9
(-0.8)
P 		109.3
(3)
P 		92
C 46.5
(-0.3)
P 		38.5
(-0.9)
P 		13
(-3)
A 		17.3
(-2.7)
P 		45.4
(-0.4)
P 		87.4
(3)
P 		74
avr 34.7
(-1.4) 		39.5
(-0.9) 		16.8
(-3) 		19.1
(-2.8) 		43.8
(-0.5) 		82
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173170_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26806
Sequence Type Exemplar sequence
Representative Public ID AV182538 NCBI
Target Description AV182538_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182538 /DEF=Caenorhabditis elegans cDNA clone:yk639d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059041 NCBI Caenorhabditis elegans C10H11.1 (C10H11.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000015966 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4752174:4759485:1 11/11 None
SNAP00000015958 ENSEMBL cdna:SNAP chromosome:CEL140:I:4753750:4759485:1 11/11 None
C10H11.1 ENSEMBL cdna:known chromosome:CEL140:I:4747628:4759602:1 gene:C10H11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4759260-4759510(+) 83.33 83.33
Public Domain and Genome References
Gene Title
Ensembl C10H11.1
Entrez Gene 172089 Entrez gene
SwissProt P91041 EMBL-EBI
WormBase CE29081 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603577_AT similar to supervillin isoform 1 cfa
CANINE:1596015_AT similar to supervillin isoform 1 cfa
CANINE:1591777_AT similar to supervillin isoform 1 cfa
CANINE_2:CFA.14972.2.S1_A_AT similar to supervillin isoform 1 cfa
CANINE_2:CFA.14972.2.S1_S_AT similar to supervillin isoform 1 cfa
CANINE_2:CFA.19132.1.S1_S_AT similar to supervillin isoform 1 cfa
CANINE_2:CFA.19132.2.S1_AT similar to supervillin isoform 1 cfa
CANINE_2:CFA.19132.2.S1_X_AT similar to supervillin isoform 1 cfa
CANINE_2:CFAAFFX.6930.1.S1_S_AT similar to supervillin isoform 1 cfa
DROSOPHILA_2:1631431_AT dm
DROSOPHILA_2:1627478_AT dm
DROSGENOME1:148050_AT dm
DROSGENOME1:141711_AT dm
CHICKEN:GGA.11307.1.S1_AT similar to supervillin isoform 2; membrane-associated F-actin binding protein p205; archvillin gga
CHICKEN:GGA.9888.2.S1_A_AT similar to supervillin isoform 2; membrane-associated F-actin binding protein p205; archvillin gga
HG-U133_PLUS_2:202565_S_AT supervillin hs
HG-U133A:202565_S_AT supervillin hs
HG-FOCUS:202565_S_AT supervillin hs
HG-U133A_2:202565_S_AT supervillin hs
HG-U133_PLUS_2:202566_S_AT supervillin hs
HG-U133A_2:202566_S_AT supervillin hs
HG-U133A:202566_S_AT supervillin hs
HU35KSUBA:AA234665_AT supervillin hs
HU35KSUBA:HUM_ALU_AT supervillin hs
HU35KSUBB:HUM_ALU_AT supervillin hs
HU35KSUBC:HUM_ALU_AT supervillin hs
HU35KSUBD:HUM_ALU_AT supervillin hs
HUGENEFL:HUM_ALU_AT supervillin hs
HC-G110:HUM_ALU_AT supervillin hs
HU35KSUBC:RC_AA027106_AT supervillin hs
HU35KSUBD:RC_AA410393_AT supervillin hs
U133_X3P:G2961251_3P_A_AT supervillin hs
U133_X3P:G11496980_3P_A_AT supervillin hs
HG-U95AV2:40069_AT supervillin hs
HG-U95B:44255_AT supervillin hs
HG-U95B:44256_G_AT supervillin hs
HG-U95D:89242_F_AT supervillin hs
HG-U133_PLUS_2:230736_AT Supervillin hs
HG-U133B:230736_AT Supervillin hs
HU35KSUBB:RC_H29870_S_AT Supervillin hs
HU35KSUBD:RC_T67261_AT Supervillin hs
HU35KSUBD:RC_F10947_AT Supervillin hs
HG-U133_PLUS_2:215279_AT Supervillin hs
HG-U133A_2:215279_AT Supervillin hs
HG-U133A:215279_AT Supervillin hs
U133_X3P:HS2.382226.1.S1_3P_AT Supervillin hs
U133_X3P:HS2.382089.1.S1_3P_AT Supervillin hs
U133_X3P:HS2.375636.1.S1_3P_AT Supervillin hs
U133_X3P:HS.110835.0.A1_3P_AT Supervillin hs
U133_X3P:HS.100841.0.S1_3P_AT Supervillin hs
HG-U133_PLUS_2:1562059_AT Supervillin hs
HG-U133_PLUS_2:1564192_AT Supervillin hs
HG-U133_PLUS_2:1569512_AT Supervillin hs
HG-U133_PLUS_2:230737_S_AT Supervillin hs
HG-U133B:230737_S_AT Supervillin hs
HG-U95AV2:35054_AT Supervillin hs
HG-U95C:61078_AT Supervillin hs
HG-U95C:61758_AT Supervillin hs
HG-U95D:77120_AT Supervillin hs
HG-U133_PLUS_2:1560230_AT Supervillin hs
HG-U133_PLUS_2:229988_AT Supervillin hs
HG-U133B:229988_AT Supervillin hs
HG-U133_PLUS_2:234439_AT Supervillin hs
HG-U133B:234439_AT Supervillin hs
HG-U133_PLUS_2:238882_AT Supervillin hs
HG-U133B:238882_AT Supervillin hs
HG-U133_PLUS_2:243377_AT Supervillin hs
HG-U133B:243377_AT Supervillin hs
HG-U95B:42318_AT Supervillin hs
HG-U95B:42484_AT Supervillin hs
HG-U95B:59448_AT Supervillin hs
HG-U95C:61528_AT Supervillin hs
HG-U95C:61565_AT Supervillin hs
HG-U95D:67869_AT Supervillin hs
HG-U95D:69749_AT Supervillin hs
HG-U95D:72583_AT Supervillin hs
HG-U95D:73961_AT Supervillin hs
HG-U95D:81658_AT Supervillin hs
HG-U95E:88807_AT Supervillin hs
HU35KSUBD:RC_AA460376_AT Supervillin hs
HU35KSUBD:RC_AA521427_AT Supervillin hs
HU35KSUBD:RC_N69567_AT Supervillin hs
U133_X3P:HS.105527.0.A1_3P_AT Supervillin hs
U133_X3P:HS.124733.0.A1_3P_AT Supervillin hs
U133_X3P:HS.311356.0.A1_3P_AT Supervillin hs
MOE430A:1460735_AT supervillin mm
MOUSE430A_2:1460735_AT supervillin mm
MOUSE430_2:1460735_AT supervillin mm
MG-U74AV2:104360_AT supervillin mm
MG-U74CV2:170385_R_AT supervillin mm
MOE430A:1460694_S_AT supervillin mm
MOUSE430A_2:1460694_S_AT supervillin mm
MOUSE430_2:1460694_S_AT supervillin mm
MU19KSUBB:TC26576_AT Supervillin (Svil), transcript variant 1, mRNA mm
RG-U34A:RC_AA800735_G_AT supervillin (predicted) rn
RG-U34A:RC_AA800735_AT supervillin (predicted) rn
RG-U34B:RC_AI045848_S_AT supervillin (predicted) rn
RG-U34C:RC_AI071186_AT supervillin (predicted) rn
RG-U34C:RC_AI236596_AT supervillin (predicted) rn
RAE230A:1376572_A_AT supervillin (predicted) rn
RAT230_2:1376572_A_AT supervillin (predicted) rn
RAE230B:1395211_S_AT supervillin (predicted) rn
RAT230_2:1395211_S_AT supervillin (predicted) rn
RAE230B:1395210_AT supervillin (predicted) rn
RAT230_2:1395210_AT supervillin (predicted) rn
RAE230A:1391004_AT Supervillin (predicted) rn
RAT230_2:1391004_AT Supervillin (predicted) rn
RAE230B:1393313_AT Supervillin (predicted) rn
RAT230_2:1393313_AT Supervillin (predicted) rn
RG-U34B:RC_AI059899_AT Supervillin (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7010 cytoskeleton organization and biogenesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42341 Hypothetical protein C10H11.1 [Caenorhabditis elegans] ref|NP_491442.1| C10H11.1 [Caenorhabditis elegans] 0.0
blast CAE60361 Hypothetical protein CBG03958 [Caenorhabditis briggsae] 0.0
blast T20782 hypothetical protein F11D11.9 - Caenorhabditis elegans 0.0
blast AAS64939 CG33232-PA, isoform A [Drosophila melanogaster] ref|NP_995968.1| CG33232-PA, isoform A [Drosophila melanogaster] 9.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR003128 EMBL-EBI Villin headpiece 1.7E-24
Pfam IPR003128 EMBL-EBI Villin headpiece 1.7E-24
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:173170_S_AT
gcgatgtttcggatcttctcaaagaacgttgtagaacattttcactcgaagaactgaaag
aacgaacaagtcttccagctggaatggacatgagacgtctggagagctacttgactgacg
acgattttatgaaagtttttaaaattgaaagaagcgaattttatgctcaaaaaacttgga
aacagaacgatgcacggaaaagagttggactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATGTTTCGGATCTTCTCAAAGA 291 291 20 Antisense
GGATCTTCTCAAAGAACGTTGTAGA 619 511 30 Antisense
GTAGAACATTTTCACTCGAAGAACT 569 455 50 Antisense
GAACGAACAAGTCTTCCAGCTGGAA 312 345 79 Antisense
GCTGGAATGGACATGAGACGTCTGG 320 295 97 Antisense
GAGACGTCTGGAGAGCTACTTGACT 669 393 111 Antisense
GAGAGCTACTTGACTGACGACGATT 278 395 121 Antisense
ACTTGACTGACGACGATTTTATGAA 54 101 128 Antisense
GAAAGAAGCGAATTTTATGCTCAAA 511 359 166 Antisense
ACTTGGAAACAGAACGATGCACGGA 187 101 193 Antisense
GATGCACGGAAAAGAGTTGGACTAT 528 411 208 Antisense
Sequence Source Affymetrix Proprietary Database