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[173169_at]

Description AV175985_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV175985 /DEF=Caenorhabditis elegans cDNA clone:yk499f11 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 14.9
(-3)
A 		62
(3)
A 		34.1
(-0.6)
A 		19.4
(-2.4)
A 		47
B 31.3
(1.3)
A 		30.4
(0.9)
A 		35.7
(3)
A 		20.4
(-3)
A 		15
C 30.6
(-3)
A 		54.7
(1.9)
P 		40.6
(-1)
M 		60
(3)
M 		29
avr 25.6
(-3) 		49
(3) 		36.8
(-0.1) 		33.3
(-1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 11.4
(-3)
A 		23.5
(0.5)
A 		32.1
(3)
A 		16.5
(-1.5)
A 		21
(-0.2)
A 		17.5
(-1.2)
A 		21
B 25.6
(0.3)
P 		25.9
(0.4)
A 		34.3
(3)
A 		28.6
(1.2)
A 		17
(-2.4)
A 		15.2
(-3)
A 		19
C 27.3
(-1.7)
P 		29.8
(-1.2)
A 		53.3
(3)
M 		19.9
(-3)
A 		41
(0.8)
P 		27
(-1.7)
A 		33
avr 21.4
(-2.6) 		26.4
(-1.1) 		39.9
(3) 		21.7
(-2.5) 		26.3
(-1.1) 		19.9
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.4
(-1.5)
A 		13.5
(3)
A 		8.9
(0.4)
A 		2.8
(-3)
A 		11
B 10
(3)
A 		7.5
(0.4)
A 		8.3
(1.2)
A 		4.3
(-3)
A 		6
C 10.1
(-3)
A 		15.7
(3)
P 		14.1
(1.3)
M 		10.1
(-3)
M 		6
avr 8.5
(-0.4) 		12.2
(3) 		10.4
(1.3) 		5.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.1
(-3)
A 		8.4
(3)
A 		7
(1.7)
A 		4.2
(-1)
A 		6.4
(1.1)
A 		4.3
(-0.9)
A 		6
B 8.9
(3)
P 		8.6
(2.4)
A 		8.3
(1.9)
A 		7.6
(0.6)
A 		6.9
(-0.8)
A 		5.7
(-3)
A 		3
C 10.1
(0.8)
P 		9.1
(0.2)
A 		13.6
(3)
M 		4
(-3)
A 		13.3
(2.8)
P 		9.1
(0.2)
A 		10
avr 7
(-0.6) 		8.7
(1.7) 		9.6
(3) 		5.3
(-3) 		8.9
(2) 		6.4
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27036
Sequence Type Exemplar sequence
Representative Public ID AV175985 NCBI
Target Description AV175985_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV175985 /DEF=Caenorhabditis elegans cDNA clone:yk499f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV175985
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV175985 AV175985_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV175985 /DEF=Caenorhabditis elegans cDNA clone:yk499f11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:173169_AT
gacactagatctgcataaacagttcatgaagcggggngtgttgatggatgtgacgaacag
ttgggtggaggtaggaagaattggtcatacgagaggtcgtcggnntccacaccgtacctg
tgttgtgttaccattggatccaagtccattgcgcgagacgtcaccatgatcatgtatcnc
caacaacntttatgtgttgttnccatgggtattcgtcgttcatgagttngctaaaattca
cagtttcagttatgttggggaacgata

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTAGATCTGCATAAACAGTTC 378 367 13 Antisense
GATGGATGTGACGAACAGTTGGGTG 634 407 55 Antisense
GAACAGTTGGGTGGAGGTAGGAAGA 424 349 67 Antisense
AAGAATTGGTCATACGAGAGGTCGT 13 135 88 Antisense
TCCACACCGTACCTGTGTTGTGTTA 699 585 118 Antisense
ACCTGTGTTGTGTTACCATTGGATC 401 87 128 Antisense
GTTGTGTTACCATTGGATCCAAGTC 232 437 134 Antisense
GATCCAAGTCCATTGCGCGAGACGT 571 415 149 Antisense
CGCGAGACGTCACCATGATCATGTA 233 253 164 Antisense
CATGGGTATTCGTCGTTCATGAGTT 144 209 216 Antisense
GTTTCAGTTATGTTGGGGAACGATA 14 449 255 Antisense
Sequence Source Affymetrix Proprietary Database