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[173165_s_at]

Description AV200831_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200831 /DEF=Caenorhabditis elegans cDNA clone:yk581d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 72      6grp_total > 69      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 654.6
(3)
P 		411.7
(-2.1)
P 		368.6
(-3)
P 		640
(2.7)
P 		286
B 629.9
(3)
P 		530.7
(0.7)
P 		373.6
(-3)
P 		624.6
(2.9)
P 		256
C 709.4
(3)
P 		363.7
(-3)
P 		398.2
(-2.4)
P 		629.7
(1.6)
P 		346
avr 664.6
(3) 		435.4
(-1.8) 		380.1
(-3) 		631.4
(2.3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 417.7
(-0.7)
P 		484.3
(2.4)
P 		368.8
(-3)
P 		411.3
(-1)
P 		399.8
(-1.6)
P 		497.7
(3)
P 		129
B 404.6
(-0.7)
P 		425.8
(0.3)
P 		464.3
(2.1)
P 		362.6
(-2.8)
P 		358
(-3)
P 		481.9
(3)
P 		124
C 464.9
(1.1)
P 		397
(-2.5)
P 		388.5
(-3)
P 		419.2
(-1.4)
P 		479.7
(1.9)
P 		500.6
(3)
P 		112
avr 429.1
(-1) 		435.7
(-0.6) 		407.2
(-2.4) 		397.7
(-3) 		412.5
(-2.1) 		493.4
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 238.3
(3)
P 		89.4
(-3)
P 		96.4
(-2.7)
P 		93.7
(-2.8)
P 		149
B 200.9
(3)
P 		131.1
(-0.7)
P 		86.6
(-3)
P 		133.1
(-0.6)
P 		114
C 234.8
(3)
P 		104.6
(-3)
P 		138.8
(-1.4)
P 		106.2
(-2.9)
P 		130
avr 224.7
(3) 		108.4
(-2.9) 		107.3
(-3) 		111
(-2.8) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 77
(-3)
P 		172.2
(3)
P 		80.3
(-2.8)
P 		104.3
(-1.3)
P 		120.7
(-0.2)
P 		121.2
(-0.2)
P 		95
B 140.8
(0.2)
P 		141.7
(0.3)
P 		112.7
(-1.8)
P 		96
(-3)
P 		145.4
(0.5)
P 		179.7
(3)
P 		84
C 172.3
(3)
P 		121.1
(-0.5)
P 		98.9
(-2)
P 		84.3
(-3)
P 		155.2
(1.8)
P 		167.6
(2.7)
P 		88
avr 130
(0.4) 		145
(1.9) 		97.3
(-2.8) 		94.9
(-3) 		140.4
(1.5) 		156.2
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27020
Sequence Type Exemplar sequence
Representative Public ID AV200831 NCBI
Target Description AV200831_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200831 /DEF=Caenorhabditis elegans cDNA clone:yk581d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064863 NCBI Caenorhabditis elegans B0412.3 (B0412.3) mRNA, complete cds. 11/11 A 
B0412.3.1 ENSEMBL cdna:known chromosome:CEL140:III:795130:809433:1 gene:B0412.3 11/11 None
B0412.3.2 ENSEMBL cdna:known chromosome:CEL140:III:795133:809433:1 gene:B0412.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002849 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:806238-809368(+) 99.33 99.33
Public Domain and Genome References
Gene Title
Ensembl B0412.3
Entrez Gene 175236 Entrez gene
SwissProt P90984 EMBL-EBI
WormBase CE03884 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247112_AT expressed protein at
CANINE:1603712_AT similar to CG17569-PB, isoform B cfa
CANINE:1599210_AT similar to CG17569-PB, isoform B cfa
CANINE:1586294_AT similar to CG17569-PB, isoform B cfa
CANINE_2:CFA.15518.2.A1_AT similar to CG17569-PB, isoform B cfa
CANINE_2:CFA.20595.1.S1_S_AT similar to CG17569-PB, isoform B cfa
CANINE_2:CFAAFFX.12606.1.S1_S_AT similar to CG17569-PB, isoform B cfa
DROSOPHILA_2:1625888_A_AT gryzun dm
DROSGENOME1:148090_AT gryzun dm
CHICKEN:GGAAFFX.12998.1.S1_AT similar to FLJ12716 protein isoform a gga
CHICKEN:GGAAFFX.6732.1.S1_S_AT similar to FLJ12716 protein isoform a gga
HG-U133_PLUS_2:233558_S_AT FLJ12716 protein hs
HG-U133B:233558_S_AT FLJ12716 protein hs
HG-U133_PLUS_2:218179_S_AT FLJ12716 protein hs
HG-U133A:218179_S_AT FLJ12716 protein hs
HG-U133A_2:218179_S_AT FLJ12716 protein hs
HU35KSUBB:RC_R49215_AT FLJ12716 protein hs
HU35KSUBC:RC_AA262508_AT FLJ12716 protein hs
HU35KSUBD:RC_R93052_AT FLJ12716 protein hs
U133_X3P:G11345481_3P_A_AT FLJ12716 protein hs
U133_X3P:HS.5354.1.S1_3P_A_AT FLJ12716 protein hs
HG-U95C:64437_AT FLJ12716 protein hs
HG-U133_PLUS_2:234747_AT FLJ12716 protein hs
HG-U133B:234747_AT FLJ12716 protein hs
U133_X3P:HS2.434428.1.S1_3P_AT FLJ12716 protein hs
HG-U133_PLUS_2:1561712_AT FLJ12716 protein hs
HG-U95E:85028_AT FLJ12716 protein hs
HU35KSUBA:H61937_AT FLJ12716 protein hs
HU35KSUBC:RC_D25716_AT FLJ12716 protein hs
HU35KSUBC:RC_N75993_AT FLJ12716 protein hs
MG-U74BV2:116880_AT RIKEN cDNA D030016E14 gene mm
MG-U74CV2:167608_F_AT RIKEN cDNA D030016E14 gene mm
MOE430B:1433752_S_AT RIKEN cDNA D030016E14 gene mm
MOUSE430_2:1433752_S_AT RIKEN cDNA D030016E14 gene mm
RAE230A:1399129_AT Similar to hypothetical protein (predicted) rn
RAT230_2:1399129_AT Similar to hypothetical protein (predicted) rn
RG-U34B:RC_AA924317_AT Similar to hypothetical protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB52556 Hypothetical protein B0412.3 [Caenorhabditis elegans] ref|NP_497264.1| B0412.3 [Caenorhabditis elegans] 0.0
blast CAE69247 Hypothetical protein CBG15291 [Caenorhabditis briggsae] 0.0
blast NP_955920 hypothetical protein LOC323003 [Danio rerio] gb|AAT68061.1| foie gras [Danio rerio] 3.0E-75
Sequence
Target Sequence 
>C. ELEGANS:173165_S_AT
aaagccattccaaagaggccgtcgaaatctctaccaatttcgacctcaacgacgtgttca
tgttcagcggagagagaaaggtgacaatgacagttttaccgggagccacgcggcgagtta
cggtggttgtgatggcgttgagtgctggaagactcaatttcccaaagatttccttaaaat
ctccacaaatttcggaccaaacacttcaacaatcgcttcgcaccctacccgctgccattt
tcgtcttgccgaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCATTCCAAAGAGGCCGTCGA 553 121 18 Antisense
AGAGGCCGTCGAAATCTCTACCAAT 279 67 31 Antisense
CTCTACCAATTTCGACCTCAACGAC 106 229 46 Antisense
CGACGTGTTCATGTTCAGCGGAGAG 572 251 67 Antisense
CAATGACAGTTTTACCGGGAGCCAC 240 167 102 Antisense
ACGCGGCGAGTTACGGTGGTTGTGA 493 87 125 Antisense
GGTTGTGATGGCGTTGAGTGCTGGA 98 507 142 Antisense
GAGTGCTGGAAGACTCAATTTCCCA 293 401 157 Antisense
TAAAATCTCCACAAATTTCGGACCA 135 639 192 Antisense
CGGACCAAACACTTCAACAATCGCT 529 243 210 Antisense
CTGCCATTTTCGTCTTGCCGAAAGC 259 237 249 Antisense
Sequence Source Affymetrix Proprietary Database