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[173164_s_at]

Description AV184662_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184662 /DEF=Caenorhabditis elegans cDNA clone:yk667g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 22      4grp_highest_8_8 > 16      4grp_high_8_8 > 53      6grp_highest_nonorm > 14      6grp_total > 13      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3635
1 2 3 4 range
A 3586
(0.7)
P 		4834.7
(3)
P 		4822.7
(3)
P 		1605.5
(-3)
P 		3229
B 3695.1
(0.2)
P 		5173.9
(3)
P 		4960.2
(2.6)
P 		2053.9
(-3)
P 		3120
C 3461.1
(0.5)
P 		4788.7
(3)
P 		4617.4
(2.7)
P 		1539.4
(-3)
P 		3249
avr 3580.7
(0.5) 		4932.4
(3) 		4800.1
(2.8) 		1732.9
(-3) 		3200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3275
1 2 3 4 5 6 range
A 4251.8
(2.4)
P 		4435.3
(3)
P 		3973.5
(1.5)
P 		3514.1
(-0)
P 		3641.7
(0.4)
P 		2604.5
(-3)
P 		1831
B 5309
(3)
P 		4293.2
(1)
P 		3660
(-0.3)
P 		3794.4
(-0)
P 		3495.8
(-0.6)
P 		2286
(-3)
P 		3023
C 4133.4
(2.2)
P 		4112.9
(2.1)
P 		4458.5
(3)
P 		3509.7
(0.7)
P 		3258.4
(0)
P 		2034.2
(-3)
P 		2424
avr 4564.7
(3) 		4280.5
(2.2) 		4030.7
(1.6) 		3606.1
(0.5) 		3465.3
(0.1) 		2308.2
(-3) 		2257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1374
1 2 3 4 range
A 1305.7
(3)
P 		1049.5
(1.6)
P 		1260.8
(2.7)
P 		235
(-3)
P 		1071
B 1178.3
(2.3)
P 		1277.8
(3)
P 		1149.4
(2.1)
P 		437.7
(-3)
P 		840
C 1145.7
(0.9)
P 		1376.8
(2)
P 		1609.3
(3)
P 		259.6
(-3)
P 		1350
avr 1209.9
(2.2) 		1234.7
(2.4) 		1339.8
(3) 		310.8
(-3) 		1029

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1213
1 2 3 4 5 6 range
A 783.8
(-2)
P 		1577.4
(3)
P 		865.3
(-1.5)
P 		891.2
(-1.4)
P 		1098.9
(-0)
P 		634.1
(-3)
P 		943
B 1847.3
(3)
P 		1429
(0.5)
P 		888.8
(-2.8)
P 		1005
(-2.1)
P 		1420.3
(0.4)
P 		852.4
(-3)
P 		995
C 1532.1
(3)
P 		1255
(1)
P 		1134.8
(0.2)
P 		705.8
(-2.8)
P 		1054.4
(-0.4)
P 		681
(-3)
P 		851
avr 1387.7
(2.7) 		1420.5
(3) 		963
(-0.9) 		867.3
(-1.8) 		1191.2
(1) 		722.5
(-3) 		698
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173164_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26885
Sequence Type Exemplar sequence
Representative Public ID AV184662 NCBI
Target Description AV184662_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184662 /DEF=Caenorhabditis elegans cDNA clone:yk667g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067129 NCBI Caenorhabditis elegans C18D11.1 (C18D11.1) mRNA, complete cds. 11/11 A 
SNAP00000031595 ENSEMBL cdna:SNAP chromosome:CEL140:III:11812561:11819486:1 11/11 None
GENEFINDER00000031601 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11814755:11819486:1 11/11 None
C18D11.1 ENSEMBL cdna:known chromosome:CEL140:III:11816454:11819607:1 gene:C18D11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11819319-11819571(+) 84.0 84.0
Public Domain and Genome References
Gene Title
Ensembl C18D11.1
Entrez Gene 176611 Entrez gene
SwissProt Q9XTZ4 EMBL-EBI
WormBase CE18512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07320 Hypothetical protein C18D11.1 [Caenorhabditis elegans] ref|NP_499530.1| C18D11.1 [Caenorhabditis elegans] 1.0E-127
blast CAB07320 Hypothetical protein C18D11.1 [Caenorhabditis elegans] ref|NP_499530.1| C18D11.1 [Caenorhabditis elegans] 1.0E-117
blast CAE67721 Hypothetical protein CBG13296 [Caenorhabditis briggsae] 1.0E-112
blast CAE67721 Hypothetical protein CBG13296 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499530.1 4 12-34,111-133,140-162,172-194
C18D11.1 4 12-34,111-133,140-162,172-194
SNAP00000031595 4 2-21,89-111,118-140,150-172
GENEFINDER00000031601 4 43-65,142-164,171-193,203-225
Sequence
Target Sequence 
>C. ELEGANS:173164_S_AT
gctccatccacctactacggagagacccacgcagttgctccaccaccacaccgaggagca
acggactactatccagagcaacaccgaccccaacaacaatatggacactacgatcagcag
ccaccatatcggtattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCATCCACCTACTACGGAGAGA 105 299 39 Antisense
ATCCACCTACTACGGAGAGACCCAC 605 37 44 Antisense
CACCACCACACCGAGGAGCAACGGA 539 201 79 Antisense
ACCACACCGAGGAGCAACGGACTAC 511 81 83 Antisense
GGAGCAACGGACTACTATCCAGAGC 710 519 93 Antisense
CGGACTACTATCCAGAGCAACACCG 97 243 100 Antisense
AACACCGACCCCAACAACAATATGG 448 135 118 Antisense
CCGACCCCAACAACAATATGGACAC 425 263 122 Antisense
AATATGGACACTACGATCAGCAGCC 568 171 136 Antisense
TACGATCAGCAGCCACCATATCGGT 231 647 147 Antisense
TCAGCAGCCACCATATCGGTATTAA 205 625 152 Antisense
Sequence Source Affymetrix Proprietary Database