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[173161_at]

Description AV182925_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182925 /DEF=Caenorhabditis elegans cDNA clone:yk644d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 84      6grp_total > 79      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 670
1 2 3 4 range
A 536.5
(-1.5)
P 		533.4
(-1.6)
P 		471.3
(-3)
P 		738.7
(3)
P 		267
B 465.1
(-2.1)
P 		369.8
(-3)
P 		503.6
(-1.8)
P 		1039.7
(3)
P 		670
C 539.7
(-1.4)
P 		388.6
(-3)
P 		524.1
(-1.6)
P 		958.9
(3)
P 		570
avr 513.8
(-2) 		430.6
(-3) 		499.7
(-2.1) 		912.4
(3) 		482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 439
(-3)
P 		628.4
(0.2)
P 		687.9
(1.2)
P 		527.4
(-1.5)
P 		552.8
(-1.1)
P 		795.1
(3)
P 		356
B 507.6
(-2.6)
P 		758.9
(0.2)
P 		580.9
(-1.8)
P 		473.9
(-3)
P 		776.8
(0.4)
P 		1013.8
(3)
P 		540
C 580.6
(-0.8)
P 		647.5
(0.8)
P 		546.2
(-1.6)
P 		486
(-3)
P 		728.9
(2.7)
P 		740.5
(3)
P 		255
avr 509.1
(-2.8) 		678.3
(0.1) 		605
(-1.1) 		495.8
(-3) 		686.2
(0.2) 		849.8
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 195.3
(3)
P 		115.8
(-2.5)
P 		123.2
(-2)
P 		108.1
(-3)
P 		87
B 148.3
(-0.4)
P 		91.3
(-3)
P 		116.7
(-1.8)
P 		221.6
(3)
P 		130
C 178.7
(2.7)
P 		111.7
(-3)
P 		182.6
(3)
P 		161.7
(1.2)
P 		71
avr 174.1
(3) 		106.3
(-3) 		140.8
(0.1) 		163.8
(2.1) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 80.9
(-3)
P 		223.5
(3)
P 		149.8
(-0.1)
P 		133.8
(-0.8)
P 		166.8
(0.6)
P 		193.6
(1.7)
P 		143
B 176.6
(-1.8)
P 		252.6
(0)
P 		141.1
(-2.6)
P 		125.5
(-3)
P 		315.6
(1.5)
P 		378
(3)
P 		253
C 215.2
(1.7)
P 		197.6
(1)
P 		139
(-1.4)
P 		97.7
(-3)
P 		235.9
(2.5)
P 		247.9
(3)
P 		150
avr 157.6
(-1.5) 		224.6
(1.1) 		143.3
(-2.1) 		119
(-3) 		239.4
(1.7) 		273.2
(3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173161_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26824
Sequence Type Exemplar sequence
Representative Public ID AV182925 NCBI
Target Description AV182925_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182925 /DEF=Caenorhabditis elegans cDNA clone:yk644d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075110 NCBI Caenorhabditis elegans C06H5.7 (C06H5.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000016173 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17912900:17919658:1 9/11 None
C06H5.7.2 ENSEMBL cdna:known chromosome:CEL140:V:17912893:17919658:1 gene:C06H5.7 9/11 None
C06H5.7.1 ENSEMBL cdna:known chromosome:CEL140:V:17912895:17919815:1 gene:C06H5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016170 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17919458-17919710(+) 84.0 84.0
Public Domain and Genome References
Gene Title
Ensembl C06H5.7
Entrez Gene 259679 Entrez gene
SwissProt Q9U3R3 EMBL-EBI
WormBase CE31877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62778 Hypothetical protein C06H5.7 [Caenorhabditis elegans] ref|NP_507511.2| C06H5.7 [Caenorhabditis elegans] dbj|BAC66472.1| L-3,4-dihydroxyphenylalanine receptor [Caenorhabditis elegans] 0.0
blast CAE61704 Hypothetical protein CBG05653 [Caenorhabditis briggsae] 9.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507511.2 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
C06H5.7.2 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
C06H5.7.1 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
GENEFINDER00000016173 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:173161_AT
aagaagagtcggcgaccagcgaagcactttcaagcagtcgtacagttcatcaagcgccga
tcaaaactctgtgatcgatcgatcaactcgaagtcagacggtcaccactattgccagctc
cttaccatccaccaaagacaaaaaatcggcgagttttggtggtttagaggttgatcggaa
ggttgaacgattctaattattgttttattatacacatcttgttgcatatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGAGTCGGCGACCAGCGAAGC 229 153 17 Antisense
AGCACTTTCAAGCAGTCGTACAGTT 549 71 39 Antisense
GCAGTCGTACAGTTCATCAAGCGCC 6 313 50 Antisense
ATCAAGCGCCGATCAAAACTCTGTG 388 27 65 Antisense
TCAAAACTCTGTGATCGATCGATCA 430 629 77 Antisense
CGATCGATCAACTCGAAGTCAGACG 237 247 92 Antisense
AAGTCAGACGGTCACCACTATTGCC 294 149 107 Antisense
ATCGGCGAGTTTTGGTGGTTTAGAG 390 33 161 Antisense
GGTGGTTTAGAGGTTGATCGGAAGG 318 499 174 Antisense
GGAAGGTTGAACGATTCTAATTATT 452 531 193 Antisense
TATACACATCTTGTTGCATATTTCT 128 661 225 Antisense
Sequence Source Affymetrix Proprietary Database