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[173160_s_at]

Description AV181856_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181856 /DEF=Caenorhabditis elegans cDNA clone:yk625f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 81      6grp_total > 82      4grp_total > 56      6grp_highest_sub > 05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 271.2
(-3)
P 		333.7
(-1.1)
P 		472.7
(3)
P 		369.6
(-0.1)
P 		202
B 387.1
(0.6)
P 		335.3
(-1.2)
P 		453.2
(3)
P 		284.7
(-3)
P 		169
C 320.5
(0.8)
P 		368.3
(3)
P 		320.4
(0.8)
P 		238.8
(-3)
P 		130
avr 326.3
(-1.5) 		345.8
(-0.5) 		415.4
(3) 		297.7
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 250.4
(-3)
P 		254.1
(-2.7)
P 		266.2
(-1.8)
P 		309.4
(1.5)
P 		328.3
(3)
P 		272.2
(-1.3)
P 		78
B 257.8
(-2)
P 		284.3
(-0.9)
P 		336.7
(1.1)
P 		304.6
(-0.1)
P 		384.6
(3)
P 		232.2
(-3)
P 		152
C 269.2
(2.3)
P 		271.6
(2.9)
P 		251.7
(-1.7)
P 		272.2
(3)
P 		262.4
(0.8)
P 		246
(-3)
P 		26
avr 259.1
(-2.3) 		270
(-1.4) 		284.9
(-0.2) 		295.4
(0.6) 		325.1
(3) 		250.1
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 98.8
(0.9)
P 		72.4
(-1.4)
P 		123.6
(3)
P 		54.1
(-3)
P 		70
B 123.4
(3)
P 		82.8
(-0.9)
P 		105
(1.2)
P 		60.7
(-3)
P 		63
C 106.1
(2.5)
P 		105.9
(2.5)
P 		111.7
(3)
P 		40.3
(-3)
P 		71
avr 109.4
(2.6) 		87
(0.4) 		113.4
(3) 		51.7
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 46.2
(-3)
P 		90.4
(2)
P 		58
(-1.7)
P 		78.5
(0.7)
P 		99.1
(3)
P 		66.3
(-0.7)
P 		53
B 89.7
(-2.3)
P 		94.6
(-1.9)
P 		81.8
(-2.9)
P 		80.7
(-3)
P 		156.2
(3)
P 		86.6
(-2.5)
P 		76
C 99.8
(3)
P 		82.9
(0.8)
P 		64.1
(-1.7)
P 		54.7
(-3)
P 		84.9
(1)
P 		82.4
(0.7)
P 		45
avr 78.6
(-1.6) 		89.3
(-0.2) 		68
(-3) 		71.3
(-2.6) 		113.4
(3) 		78.4
(-1.6) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173160_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26771
Sequence Type Exemplar sequence
Representative Public ID AV181856 NCBI
Target Description AV181856_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181856 /DEF=Caenorhabditis elegans cDNA clone:yk625f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074777 NCBI Caenorhabditis elegans F36D3.1 (F36D3.1) mRNA, complete cds. 11/11 A 
SNAP00000025144 ENSEMBL cdna:SNAP chromosome:CEL140:V:16501952:16505276:1 11/11 None
GENEFINDER00000025159 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16501952:16505276:1 11/11 None
F36D3.1.2 ENSEMBL cdna:known chromosome:CEL140:V:16501933:16505276:1 gene:F36D3.1 11/11 None
F36D3.1.1 ENSEMBL cdna:known chromosome:CEL140:V:16501934:16505450:1 gene:F36D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16504624-16505326(+) 99.33 99.33
Public Domain and Genome References
Gene Title
Ensembl F36D3.1
Entrez Gene 180105 Entrez gene
SwissProt O45458 EMBL-EBI
WormBase CE25872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04314 Hypothetical protein F36D3.1 [Caenorhabditis elegans] ref|NP_507178.1| F36D3.1 [Caenorhabditis elegans] 0.0
blast CAE62933 Hypothetical protein CBG07140 [Caenorhabditis briggsae] 7.0E-79
Sequence
Target Sequence 
>C. ELEGANS:173160_S_AT
gatttatccgaatcactcgcagatgatcattgagatcatcgaagagcacaaggagaccct
tcaaaagacgaatcccgccgaattcgatcgactcaaaaacgaggccatcaccgtcgccgg
cgctgtccgtgtccacaaaaagtatttggaaaaccgcaagcactatccgaaacagggaat
ttttgtattgcaccgggtatccatgatctgctatttgaatggcggaaaaatcatctacaa
acagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTATCCGAATCACTCGCAGATG 314 429 13 Antisense
GATCATTGAGATCATCGAAGAGCAC 460 419 37 Antisense
GAAGAGCACAAGGAGACCCTTCAAA 396 339 53 Antisense
CCGCCGAATTCGATCGACTCAAAAA 57 261 87 Antisense
TCAAAAACGAGGCCATCACCGTCGC 4 629 105 Antisense
CGCTGTCCGTGTCCACAAAAAGTAT 569 255 133 Antisense
GAAAACCGCAAGCACTATCCGAAAC 86 353 161 Antisense
CAGGGAATTTTTGTATTGCACCGGG 699 197 185 Antisense
TTGCACCGGGTATCCATGATCTGCT 367 701 200 Antisense
GGGTATCCATGATCTGCTATTTGAA 306 497 207 Antisense
GGCGGAAAAATCATCTACAAACAGC 335 541 233 Antisense
Sequence Source Affymetrix Proprietary Database