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[173159_s_at]

Description AU115335_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115335 /DEF=Caenorhabditis elegans cDNA clone:yk730g8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 24      6grp_total > 08      4grp_total > 38      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 124.5
(3)
P 		47.3
(-1.7)
A 		25.5
(-3)
A 		46.1
(-1.8)
A 		99
B 92.8
(3)
P 		45.1
(-1.9)
M 		34.3
(-3)
P 		46.6
(-1.7)
A 		59
C 73.8
(3)
P 		32.8
(-2.5)
P 		28.7
(-3)
A 		46
(-0.7)
P 		45
avr 97
(3) 		41.7
(-1.9) 		29.5
(-3) 		46.2
(-1.5) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 107.3
(2.5)
P 		64.4
(-1.3)
P 		113.3
(3)
P 		84.9
(0.5)
P 		106.4
(2.4)
P 		45.7
(-3)
P 		68
B 132.9
(3)
P 		68.7
(-1.2)
P 		48.5
(-2.5)
A 		58.3
(-1.9)
P 		61.1
(-1.7)
P 		41.2
(-3)
P 		92
C 66.3
(1.3)
P 		40.3
(-1.3)
A 		57.6
(0.4)
P 		50
(-0.3)
A 		23.6
(-3)
A 		82.9
(3)
P 		59
avr 102.2
(3) 		57.8
(-2.8) 		73.1
(-0.8) 		64.4
(-2) 		63.7
(-2.1) 		56.6
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 45.3
(3)
P 		10.3
(-2.4)
A 		6.7
(-3)
A 		6.7
(-3)
A 		39
B 29.6
(3)
P 		11.1
(-2.1)
M 		7.9
(-3)
P 		9.9
(-2.4)
A 		22
C 24.4
(3)
P 		9.4
(-2.4)
P 		10
(-2.2)
A 		7.8
(-3)
P 		17
avr 33.1
(3) 		10.3
(-2.5) 		8.2
(-3) 		8.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 19.8
(-0.5)
P 		22.9
(0.4)
P 		24.7
(0.9)
P 		21.5
(-0)
P 		32.1
(3)
P 		11.1
(-3)
P 		21
B 46.2
(3)
P 		22.9
(-1.1)
P 		11.8
(-3)
A 		15.4
(-2.4)
P 		24.8
(-0.7)
P 		15.4
(-2.4)
P 		34
C 24.6
(2)
P 		12.3
(-1.6)
A 		14.7
(-0.9)
P 		10.1
(-2.3)
A 		7.6
(-3)
A 		27.8
(3)
P 		20
avr 30.2
(3) 		19.4
(-1.5) 		17.1
(-2.4) 		15.7
(-3) 		21.5
(-0.6) 		18.1
(-2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173159_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27528
Sequence Type Exemplar sequence
Representative Public ID AU115335 NCBI
Target Description AU115335_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115335 /DEF=Caenorhabditis elegans cDNA clone:yk730g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029116(11), NM_001029115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029116 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-112) (nhr-112) mRNA, complete cds. 11/11 None
NM_001029115 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-112) (nhr-112) mRNA, complete cds. 11/11 None
SNAP00000034985 ENSEMBL cdna:SNAP chromosome:CEL140:V:16724734:16725919:-1 11/11 None
GENEFINDER00000034990 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16724734:16726408:-1 11/11 None
Y70C5C.6b ENSEMBL cdna:known chromosome:CEL140:V:16724643:16726425:-1 gene:Y70C5C.6 11/11 A 
Y70C5C.6a ENSEMBL cdna:known chromosome:CEL140:V:16724734:16726425:-1 gene:Y70C5C.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16724713-16725417(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y70C5C.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16534 Hypothetical protein Y70C5C.6a [Caenorhabditis elegans] ref|NP_001024286.1| Nuclear Hormone Receptor family member (nhr-112) [Caenorhabditis elegans] 0.0
blast CAE46680 Hypothetical protein Y70C5C.6b [Caenorhabditis elegans] ref|NP_001024287.1| Nuclear Hormone Receptor family member (nhr-112) [Caenorhabditis elegans] 1.0E-171
blast CAB16534 Hypothetical protein Y70C5C.6a [Caenorhabditis elegans] ref|NP_001024286.1| Nuclear Hormone Receptor family member (nhr-112) [Caenorhabditis elegans] 1.0E-159
blast CAE46680 Hypothetical protein Y70C5C.6b [Caenorhabditis elegans] ref|NP_001024287.1| Nuclear Hormone Receptor family member (nhr-112) [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.1E-6
Sequence
Target Sequence 
>C. ELEGANS:173159_S_AT
taatggctactcaaacatatctgacaattgcctcgaaatgtgtagggatatccagaaagt
gatactcaaggagttgcgaaactatcaaatcgataggaactttcatgaaaatcgtttttt
cgttgccttagaggctttgcaaatcattgaaagaggagagaagaaattcatggaggagat
gttggtgtgcgagatgaatcatatccggatacatgatgatttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGGCTACTCAAACATATCTGAC 315 637 40 Antisense
AAACATATCTGACAATTGCCTCGAA 160 129 52 Antisense
CTGACAATTGCCTCGAAATGTGTAG 660 237 60 Antisense
GGGATATCCAGAAAGTGATACTCAA 138 497 84 Antisense
GGAGTTGCGAAACTATCAAATCGAT 119 519 109 Antisense
ATCAAATCGATAGGAACTTTCATGA 15 27 123 Antisense
TCGTTTTTTCGTTGCCTTAGAGGCT 202 589 151 Antisense
GCCTTAGAGGCTTTGCAAATCATTG 3 281 164 Antisense
GGAGGAGATGTTGGTGTGCGAGATG 107 517 211 Antisense
GTGCGAGATGAATCATATCCGGATA 421 479 226 Antisense
TATCCGGATACATGATGATTTCAGA 327 657 241 Antisense
Sequence Source Affymetrix Proprietary Database