[Home] | [Total List]

[173158_at]

Description AV199532_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199532 /DEF=Caenorhabditis elegans cDNA clone:yk547g6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 08      6grp_total > 93      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 102.8
(2.4)
P 		6.4
(-3)
A 		72.6
(0.7)
A 		114.5
(3)
P 		108
B 93.6
(3)
P 		55.2
(-0.7)
A 		31.1
(-3)
A 		87.2
(2.4)
P 		63
C 86.4
(3)
P 		34.8
(-1.9)
P 		23.6
(-3)
A 		76.2
(2)
M 		63
avr 94.3
(3) 		32.1
(-3) 		42.4
(-2) 		92.6
(2.8) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 82.1
(3)
P 		26.6
(-3)
A 		69
(1.6)
P 		52
(-0.3)
A 		80.7
(2.8)
P 		40.9
(-1.5)
A 		56
B 82.8
(3)
P 		65.9
(-0.6)
P 		54.3
(-3)
P 		72.1
(0.7)
P 		63.6
(-1)
P 		67.3
(-0.3)
P 		29
C 11.1
(-3)
A 		56.4
(3)
P 		35.6
(0.2)
A 		46.3
(1.7)
A 		40.2
(0.9)
A 		48.3
(1.9)
P 		45
avr 58.7
(1.6) 		49.6
(-3) 		53
(-1.3) 		56.8
(0.6) 		61.5
(3) 		52.2
(-1.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 37.4
(3)
P 		1.4
(-3)
A 		19
(-0.1)
A 		16.8
(-0.4)
P 		36
B 29.8
(3)
P 		13.6
(-1.3)
A 		7.2
(-3)
A 		18.6
(0)
P 		23
C 28.6
(3)
P 		10
(-2.5)
P 		8.2
(-3)
A 		12.9
(-1.6)
M 		20
avr 31.9
(3) 		8.3
(-3) 		11.5
(-2.2) 		16.1
(-1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.1
(-0.7)
P 		9.5
(-3)
A 		15
(-0.8)
P 		13.2
(-1.5)
A 		24.3
(3)
P 		10
(-2.8)
A 		15
B 28.8
(3)
P 		21.9
(0.3)
P 		13.2
(-3)
P 		19.1
(-0.7)
P 		25.8
(1.8)
P 		25.1
(1.6)
P 		16
C 4.1
(-3)
A 		17.2
(3)
P 		9
(-0.8)
A 		9.3
(-0.6)
A 		13
(1.1)
A 		16.2
(2.5)
P 		13
avr 16
(-0.5) 		16.2
(-0.3) 		12.4
(-3) 		13.9
(-2) 		21
(3) 		17.1
(0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26954
Sequence Type Exemplar sequence
Representative Public ID AV199532 NCBI
Target Description AV199532_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199532 /DEF=Caenorhabditis elegans cDNA clone:yk547g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199532
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199532 AV199532_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199532 /DEF=Caenorhabditis elegans cDNA clone:yk547g6 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071627 10/11 Negative Strand Matching Probes A 
W08A12.2 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3684525-3685546(+) 91.0 99.33
Sequence
Target Sequence 
>C. ELEGANS:173158_AT
aatattaaaaattcacgctagcgtgcttnggaacaatgcaaaaaacgatttnaaaaaaaa
acacacacaaaaanagcaggaaaaaaatccanaattcacggagaaatccgcatcgggcgg
agaattcggttctggttgacacgtccctcggtcangtcgtcgtaatctttggggaacggt
gaatgcaggtgccaccagtcgggtagactgctttcaactgtcaagaagc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATTAAAAATTCACGCTAGCGTG 158 173 25 Antisense
TCACGGAGAAATCCGCATCGGGCGG 132 627 120 Antisense
CGCATCGGGCGGAGAATTCGGTTCT 548 235 133 Antisense
CGGGCGGAGAATTCGGTTCTGGTTG 110 223 138 Antisense
TCGTCGTAATCTTTGGGGAACGGTG 273 1 181 Antisense
GGGGAACGGTGAATGCAGGTGCCAC 313 499 195 Antisense
TGAATGCAGGTGCCACCAGTCGGGT 482 575 204 Antisense
GGTGCCACCAGTCGGGTAGACTGCT 697 501 212 Antisense
AGTCGGGTAGACTGCTTTCAACTGT 415 61 221 Antisense
GGGTAGACTGCTTTCAACTGTCAAG 315 495 225 Antisense
AGACTGCTTTCAACTGTCAAGAAGC 40 71 229 Antisense
Sequence Source Affymetrix Proprietary Database