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[173156_s_at]

Description AU115064_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115064 /DEF=Caenorhabditis elegans cDNA clone:yk725d7 : 3prime end, single read.
Cluster 6grp_total > 67      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 48.1
(-0.1)
A 		23.2
(-1.7)
A 		3.3
(-3)
A 		94.5
(3)
A 		91
B 51
(0.7)
A 		5.9
(-3)
A 		14.8
(-2.3)
A 		78.6
(3)
A 		73
C 62
(0.9)
P 		28.4
(-3)
A 		38.8
(-1.8)
A 		80.6
(3)
M 		52
avr 53.7
(0.2) 		19.2
(-3) 		19
(-3) 		84.6
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9.1
(-1.7)
A 		1.6
(-3)
A 		4.2
(-2.5)
A 		3
(-2.8)
A 		2.3
(-2.9)
A 		36.1
(3)
A 		35
B 2.2
(-2.8)
A 		2.8
(-2.5)
A 		2.8
(-2.5)
A 		2
(-2.8)
A 		1.6
(-3)
A 		16.6
(3)
A 		15
C 1.4
(-3)
A 		2
(-2.9)
A 		5.2
(-2.3)
A 		3
(-2.7)
A 		1.7
(-2.9)
A 		35.6
(3)
A 		34
avr 4.2
(-2.5) 		2.1
(-3) 		4.1
(-2.5) 		2.7
(-2.8) 		1.9
(-3) 		29.4
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.5
(3)
A 		5
(-1.5)
A 		0.9
(-3)
A 		13.8
(1.7)
A 		17
B 16.3
(2.8)
A 		1.4
(-3)
A 		3.4
(-2.2)
A 		16.7
(3)
A 		15
C 20.5
(3)
P 		8.2
(-3)
A 		13.5
(-0.4)
A 		13.6
(-0.4)
M 		12
avr 18.1
(3) 		4.9
(-3) 		5.9
(-2.5) 		14.7
(1.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.7
(-2.2)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		0.8
(-2.9)
A 		0.7
(-2.9)
A 		8.8
(3)
A 		8
B 0.8
(-2.7)
A 		0.9
(-2.6)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		6.2
(3)
A 		6
C 0.5
(-3)
A 		0.6
(-2.9)
A 		1.3
(-2.6)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		11.9
(3)
A 		11
avr 1
(-2.7) 		0.7
(-2.9) 		1
(-2.7) 		0.6
(-3) 		0.6
(-3) 		9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173156_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27515
Sequence Type Exemplar sequence
Representative Public ID AU115064 NCBI
Target Description AU115064_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115064 /DEF=Caenorhabditis elegans cDNA clone:yk725d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) AF071384
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AF071384 NCBI Caenorhabditis elegans strain N2 clone DDRT32, rRNA sequence. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15074966-15075216(+) 83.33 83.33
Sequence
Target Sequence 
>C. ELEGANS:173156_S_AT
tctagtatcctgatcgctcatctaaacaaccgtactggaaccggtacggactcagggaat
ccgactgtctaattaaaacagaggtgacagatggtccttgcggacgttgactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAGTATCCTGATCGCTCATCTAA 691 613 104 Antisense
GTATCCTGATCGCTCATCTAAACAA 340 455 108 Antisense
ATCGCTCATCTAAACAACCGTACTG 145 35 116 Antisense
CATCTAAACAACCGTACTGGAACCG 280 109 122 Antisense
GTACTGGAACCGGTACGGACTCAGG 136 441 135 Antisense
TGGAACCGGTACGGACTCAGGGAAT 429 545 139 Antisense
GGACTCAGGGAATCCGACTGTCTAA 621 521 151 Antisense
GGAATCCGACTGTCTAATTAAAACA 367 533 159 Antisense
GAGGTGACAGATGGTCCTTGCGGAC 430 401 184 Antisense
GACAGATGGTCCTTGCGGACGTTGA 184 369 189 Antisense
GATGGTCCTTGCGGACGTTGACTGT 587 407 193 Antisense
Sequence Source Affymetrix Proprietary Database