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[173155_at]

Description AV181818_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181818 /DEF=Caenorhabditis elegans cDNA clone:yk625b7 : 3prime end, single read.
Cluster 4grp_high_8_8 > 15      6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 15.8
(-3)
A 		53.8
(-1.3)
P 		70
(-0.6)
A 		148.9
(3)
P 		133
B 48
(-1.7)
P 		22.9
(-3)
A 		48.9
(-1.6)
A 		134.5
(3)
P 		112
C 65.6
(1.2)
A 		4.5
(-3)
A 		64.7
(1.2)
P 		90.9
(3)
A 		86
avr 43.1
(-2) 		27.1
(-3) 		61.2
(-0.9) 		124.8
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 2.6
(-3)
A 		16.7
(-2.8)
A 		61.4
(-2.1)
M 		58.7
(-2.1)
P 		321
(2.1)
P 		375.3
(3)
P 		373
B 56.9
(-2.7)
P 		45.6
(-2.8)
A 		28.6
(-3)
A 		68.5
(-2.6)
P 		300.8
(-0.1)
P 		598.8
(3)
P 		570
C 21.1
(-3)
P 		34.8
(-2.8)
P 		32.8
(-2.9)
A 		102.1
(-2.1)
P 		317.5
(0.3)
P 		566.6
(3)
P 		546
avr 26.9
(-3) 		32.4
(-2.9) 		40.9
(-2.8) 		76.4
(-2.4) 		313.1
(0.5) 		513.6
(3) 		487
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 5.8
(-3)
A 		11.7
(-0.8)
P 		18.3
(1.7)
A 		21.8
(3)
P 		16
B 15.3
(-0.5)
P 		5.6
(-3)
A 		11.3
(-1.5)
A 		28.7
(3)
P 		23
C 21.7
(2.8)
A 		1.3
(-3)
A 		22.5
(3)
P 		15.3
(1)
A 		21
avr 14.3
(0.1) 		6.2
(-3) 		17.4
(1.3) 		21.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 0.5
(-3)
A 		5.9
(-2.7)
A 		13.4
(-2.2)
M 		14.9
(-2.1)
P 		96.9
(3)
P 		91.4
(2.7)
P 		96
B 19.8
(-2.6)
P 		15.2
(-2.8)
A 		7
(-3)
A 		18.1
(-2.7)
P 		122.2
(0.2)
P 		223.3
(3)
P 		216
C 7.8
(-3)
P 		10.6
(-2.9)
P 		8.3
(-3)
A 		20.5
(-2.6)
P 		102.7
(0.1)
P 		189.7
(3)
P 		182
avr 9.4
(-3) 		10.6
(-3) 		9.6
(-3) 		17.8
(-2.7) 		107.3
(0.7) 		168.1
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26769
Sequence Type Exemplar sequence
Representative Public ID AV181818 NCBI
Target Description AV181818_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181818 /DEF=Caenorhabditis elegans cDNA clone:yk625b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068467(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068467 NCBI Caenorhabditis elegans C31H1.8 (C31H1.8) mRNA, complete cds. 10/11 None
C31H1.8 ENSEMBL cdna:known chromosome:CEL140:IV:5811639:5814119:-1 gene:C31H1.8 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5811644-5811936(-) 94.33 94.33
Public Domain and Genome References
Gene Title
Ensembl C31H1.8
Entrez Gene 177351 Entrez gene
SwissProt Q18343 EMBL-EBI
WormBase CE27808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83612 Hypothetical protein C31H1.8 [Caenorhabditis elegans] ref|NP_500868.1| C31H1.8 [Caenorhabditis elegans] 0.0
blast CAE72645 Hypothetical protein CBG19851 [Caenorhabditis briggsae] 1.0E-149
blast CAE72652 Hypothetical protein CBG19859 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:173155_AT
ttaaattcttcttcattccgttaatgttnatcctaactttatatttattgttatagagag
agccacaattattgttcttattgtactatgcttaaagttgccaattcatatgtcatttat
aacccataatagtgtctctagttgctccccccaccatctcgctttattttttattt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAATTCTTCTTCATTCCGTTAAT 689 683 14 Antisense
AATTCTTCTTCATTCCGTTAATGTT 38 177 17 Antisense
ATCCTAACTTTATATTTATTGTTAT 624 33 43 Antisense
GAGAGCCACAATTATTGTTCTTATT 339 395 71 Antisense
TGTTCTTATTGTACTATGCTTAAAG 385 561 86 Antisense
GTACTATGCTTAAAGTTGCCAATTC 491 459 96 Antisense
AAAGTTGCCAATTCATATGTCATTT 331 123 107 Antisense
AATTCATATGTCATTTATAACCCAT 652 175 116 Antisense
TTATAACCCATAATAGTGTCTCTAG 626 679 130 Antisense
ATAATAGTGTCTCTAGTTGCTCCCC 329 25 139 Antisense
CACCATCTCGCTTTATTTTTTATTT 701 201 165 Antisense
Sequence Source Affymetrix Proprietary Database