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[173154_s_at]

Description AU114683_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114683 /DEF=Caenorhabditis elegans cDNA clone:yk727b8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 72      6grp_total > 71      4grp_total > 33      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 17.3
(-3)
A 		101.1
(1.2)
P 		67.7
(-0.5)
P 		136.3
(3)
P 		119
B 16.7
(-3)
A 		96.3
(2.3)
A 		106
(3)
P 		92
(2.1)
P 		89
C 45
(-3)
A 		84.5
(-0.6)
M 		116.5
(1.3)
P 		144.2
(3)
P 		99
avr 26.3
(-3) 		94
(1.1) 		96.7
(1.3) 		124.2
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 32.8
(-3)
A 		83
(-1.3)
P 		211.8
(3)
P 		172.3
(1.7)
P 		85.7
(-1.2)
P 		40.6
(-2.7)
M 		179
B 58.3
(-3)
P 		97.7
(-1.3)
P 		119.1
(-0.4)
P 		197.5
(3)
P 		107.9
(-0.9)
P 		103.1
(-1.1)
P 		139
C 46.2
(-3)
M 		121.8
(-0.6)
P 		142
(0.1)
P 		231.4
(3)
P 		80.8
(-1.9)
P 		72.6
(-2.1)
P 		185
avr 45.8
(-3) 		100.8
(-0.9) 		157.6
(1.3) 		200.4
(3) 		91.5
(-1.2) 		72.1
(-2) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 6.3
(-3)
A 		21.9
(3)
P 		17.7
(1.4)
P 		20
(2.3)
P 		16
B 5.3
(-3)
A 		23.8
(2.8)
A 		24.6
(3)
P 		19.6
(1.4)
P 		19
C 14.9
(-3)
A 		24.3
(-0.8)
M 		40.6
(3)
P 		24.3
(-0.8)
P 		26
avr 8.8
(-3) 		23.3
(1.6) 		27.6
(3) 		21.3
(1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 6.1
(-3)
A 		29.5
(0.5)
P 		46.1
(3)
P 		43.7
(2.6)
P 		25.9
(-0)
P 		9.9
(-2.4)
M 		40
B 20.3
(-3)
P 		32.5
(-0.7)
P 		28.9
(-1.4)
P 		52.3
(3)
P 		43.8
(1.4)
P 		38.4
(0.4)
P 		32
C 17.1
(-3)
M 		37.2
(1.1)
P 		36.2
(0.9)
P 		46.5
(3)
P 		26.1
(-1.2)
P 		24.3
(-1.5)
P 		29
avr 14.5
(-3) 		33.1
(0.4) 		37.1
(1.1) 		47.5
(3) 		31.9
(0.2) 		24.2
(-1.2) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173154_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27505
Sequence Type Exemplar sequence
Representative Public ID AU114683 NCBI
Target Description AU114683_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114683 /DEF=Caenorhabditis elegans cDNA clone:yk727b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074073 NCBI Caenorhabditis elegans T26F2.2 (T26F2.2) mRNA, complete cds. 11/11 A 
SNAP00000032932 ENSEMBL cdna:SNAP chromosome:CEL140:V:13984156:13984990:-1 11/11 None
GENEFINDER00000032933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13982159:13985559:-1 11/11 None
T26F2.2 ENSEMBL cdna:known chromosome:CEL140:V:13982159:13985559:-1 gene:T26F2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13984135-13984372(-) 79.0 79.0
Public Domain and Genome References
Gene Title
Ensembl T26F2.2
Entrez Gene 179892 Entrez gene
SwissProt O18133 EMBL-EBI
WormBase CE14203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04841 Hypothetical protein T26F2.2 [Caenorhabditis elegans] ref|NP_506474.1| T26F2.2 [Caenorhabditis elegans] 0.0
blast CAE66174 Hypothetical protein CBG11412 [Caenorhabditis briggsae] 1.0E-64
blast CAE66173 Hypothetical protein CBG11411 [Caenorhabditis briggsae] 2.0E-61
blast CAB04841 Hypothetical protein T26F2.2 [Caenorhabditis elegans] ref|NP_506474.1| T26F2.2 [Caenorhabditis elegans] 6.0E-55
Sequence
Target Sequence 
>C. ELEGANS:173154_S_AT
gtactggaccaacaagattcctgaaatggatgtcaaatgggatccaaatgtgtgcttgga
gaagctattcaatgtcctctcaactatcaagtcgaagctccagtatgatgatgaagctat
ttctgttaaattaaacggtcaacatattttttacgagagtacgaacgcaggagattggaa
ttttgtagatccttcttttctggaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTGGACCAACAAGATTCCTGAA 687 457 76 Antisense
GATTCCTGAAATGGATGTCAAATGG 653 433 91 Antisense
GGAGAAGCTATTCAATGTCCTCTCA 666 519 133 Antisense
CAATGTCCTCTCAACTATCAAGTCG 376 183 145 Antisense
TCAACTATCAAGTCGAAGCTCCAGT 684 629 155 Antisense
GTCGAAGCTCCAGTATGATGATGAA 334 475 166 Antisense
GATGATGAAGCTATTTCTGTTAAAT 263 409 182 Antisense
ACGGTCAACATATTTTTTACGAGAG 33 97 210 Antisense
GAGTACGAACGCAGGAGATTGGAAT 360 397 232 Antisense
GGAATTTTGTAGATCCTTCTTTTCT 509 531 252 Antisense
TTGTAGATCCTTCTTTTCTGGAATA 78 705 258 Antisense
Sequence Source Affymetrix Proprietary Database