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[173153_s_at]

Description AV181934_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181934 /DEF=Caenorhabditis elegans cDNA clone:yk628a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 76      6grp_total > 23      4grp_total > 59      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1008
1 2 3 4 range
A 1139.6
(0.6)
P 		1503.1
(2.9)
P 		1522.3
(3)
P 		555.2
(-3)
P 		967
B 1063.7
(0.4)
P 		1300.3
(2)
P 		1445.4
(3)
P 		549.3
(-3)
P 		896
C 1008.5
(0.3)
P 		1294.5
(2.1)
P 		1423.7
(3)
P 		514.1
(-3)
P 		910
avr 1070.6
(0.4) 		1366
(2.4) 		1463.8
(3) 		539.5
(-3) 		924

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 1279.5
(3)
P 		1205.8
(1.6)
P 		1039.5
(-1.6)
P 		968.2
(-3)
P 		1010.8
(-2.2)
P 		1026
(-1.9)
P 		311
B 1290.2
(2.1)
P 		1121.3
(0.4)
P 		1371.8
(3)
P 		1162.4
(0.8)
P 		801.3
(-3)
P 		875.2
(-2.2)
P 		571
C 1060.4
(0.7)
P 		1189
(2.4)
P 		1239.4
(3)
P 		1005
(0)
P 		874.7
(-1.6)
P 		767.6
(-3)
P 		472
avr 1210
(2.9) 		1172
(2.2) 		1216.9
(3) 		1045.2
(-0.1) 		895.6
(-2.9) 		889.6
(-3) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 414.9
(3)
P 		326.3
(1.4)
P 		398
(2.7)
P 		81.3
(-3)
P 		334
B 339.2
(3)
P 		321.1
(2.5)
P 		334.9
(2.9)
P 		117
(-3)
P 		222
C 333.9
(0.6)
P 		372.2
(1.2)
P 		496.2
(3)
P 		86.7
(-3)
P 		410
avr 362.7
(2.1) 		339.9
(1.7) 		409.7
(3) 		95
(-3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 235.9
(-2.7)
P 		428.9
(3)
P 		226.4
(-3)
P 		245.6
(-2.4)
P 		305
(-0.7)
P 		249.8
(-2.3)
P 		203
B 448.9
(3)
P 		373.2
(-0.2)
P 		333.1
(-1.9)
P 		307.9
(-3)
P 		325.5
(-2.3)
P 		326.4
(-2.2)
P 		141
C 393.1
(3)
P 		362.8
(2)
P 		315.4
(0.6)
P 		202.1
(-3)
P 		283
(-0.5)
P 		257
(-1.3)
P 		191
avr 359.3
(1.7) 		388.3
(3) 		291.6
(-1.3) 		251.9
(-3) 		304.5
(-0.7) 		277.7
(-1.9) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173153_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26774
Sequence Type Exemplar sequence
Representative Public ID AV181934 NCBI
Target Description AV181934_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181934 /DEF=Caenorhabditis elegans cDNA clone:yk628a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171083(11), NM_065151(10), NM_171084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171083 NCBI Caenorhabditis elegans W04B5.3b (W04B5.3) mRNA, complete cds. 11/11 A 
NM_065151 NCBI Caenorhabditis elegans W04B5.3c (W04B5.3) mRNA, complete cds. 10/11 A 
NM_171084 NCBI Caenorhabditis elegans W04B5.3a (W04B5.3) mRNA, complete cds. 11/11 A 
SNAP00000019371 ENSEMBL cdna:SNAP chromosome:CEL140:III:2413473:2423847:1 11/11 None
GENEFINDER00000019378 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2419127:2423308:1 9/11 None
W04B5.3b ENSEMBL cdna:known chromosome:CEL140:III:2418333:2423853:1 gene:W04B5.3 11/11 A 
W04B5.3c.1 ENSEMBL cdna:known chromosome:CEL140:III:2418553:2423890:1 gene:W04B5.3 10/11 A 
W04B5.3a ENSEMBL cdna:known chromosome:CEL140:III:2418651:2423847:1 gene:W04B5.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
W04B5.3c.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2422495-2423828(+) 98.0 98.0
Public Domain and Genome References
Ensembl W04B5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL65795 Hypothetical protein W04B5.3b [Caenorhabditis elegans] ref|NP_741096.1| W04B5.3b [Caenorhabditis elegans] 1.0E-146
blast AAC68916 Hypothetical protein W04B5.3a [Caenorhabditis elegans] ref|NP_741097.1| W04B5.3a [Caenorhabditis elegans] 1.0E-144
blast AAC68916 Hypothetical protein W04B5.3a [Caenorhabditis elegans] ref|NP_741097.1| W04B5.3a [Caenorhabditis elegans] 1.0E-142
blast AAL65795 Hypothetical protein W04B5.3b [Caenorhabditis elegans] ref|NP_741096.1| W04B5.3b [Caenorhabditis elegans] 1.0E-142
blast AAC68916 Hypothetical protein W04B5.3a [Caenorhabditis elegans] ref|NP_741097.1| W04B5.3a [Caenorhabditis elegans] 1.0E-139
blast AAL65795 Hypothetical protein W04B5.3b [Caenorhabditis elegans] ref|NP_741096.1| W04B5.3b [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:173153_S_AT
aaatcaacagcaaatgcctccgggatacaatcnttatctccaacagcacagcaacagatg
gcagccaccgtcccaatgccatatccctcaggagcagcagcagttncagtgtatgcaatg
gcaccacaagtagtacagtacccaatacagtagtcccatattagtatcctgccgttcaac
cgtatcccatgtaccaacagtatccaatg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAACAGCAAATGCCTCCGGGA 287 117 42 Antisense
AACAGCAAATGCCTCCGGGATACAA 107 123 47 Antisense
CAGCAAATGCCTCCGGGATACAATC 657 203 49 Antisense
CAGCAACAGATGGCAGCCACCGTCC 532 203 90 Antisense
CCATATCCCTCAGGAGCAGCAGCAG 519 269 120 Antisense
ATATCCCTCAGGAGCAGCAGCAGTT 304 21 122 Antisense
GCAATGGCACCACAAGTAGTACAGT 139 321 156 Antisense
GCACCACAAGTAGTACAGTACCCAA 706 293 162 Antisense
ACCGTATCCCATGTACCAACAGTAT 446 89 220 Antisense
GTATCCCATGTACCAACAGTATCCA 503 453 223 Antisense
TCCCATGTACCAACAGTATCCAATG 92 599 226 Antisense
Sequence Source Affymetrix Proprietary Database