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[173152_at]

Description AU114376_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114376 /DEF=Caenorhabditis elegans cDNA clone:yk718d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 59      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 201.6
(0)
P 		197.2
(-0.3)
P 		247.1
(3)
P 		155.8
(-3)
P 		91
B 324
(2.4)
P 		132.6
(-3)
P 		211.3
(-0.8)
P 		345.5
(3)
P 		213
C 194.1
(0.2)
P 		92.9
(-3)
P 		276.4
(2.7)
P 		284.9
(3)
A 		192
avr 239.9
(1.9) 		140.9
(-3) 		244.9
(2.1) 		262.1
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 189
(-1.6)
P 		181.8
(-2)
P 		162.4
(-3)
P 		165.1
(-2.9)
P 		213.5
(-0.4)
P 		279.3
(3)
P 		117
B 302.4
(3)
P 		167.7
(-0.8)
P 		87.7
(-3)
P 		167
(-0.8)
P 		157.3
(-1.1)
P 		201.9
(0.2)
P 		215
C 208
(-0.3)
P 		149.3
(-2.5)
P 		137.2
(-3)
P 		213.8
(-0.1)
P 		170.6
(-1.7)
P 		294.3
(3)
P 		157
avr 233.1
(1.8) 		166.3
(-1.3) 		129.1
(-3) 		182
(-0.5) 		180.5
(-0.6) 		258.5
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 73.4
(3)
P 		42.8
(-0.6)
P 		64.6
(2)
P 		22.8
(-3)
P 		51
B 103.3
(3)
P 		32.7
(-3)
P 		49
(-1.6)
P 		73.6
(0.5)
P 		71
C 64.2
(0.2)
P 		26.7
(-3)
P 		96.3
(3)
P 		48
(-1.2)
A 		70
avr 80.3
(3) 		34.1
(-3) 		70
(1.7) 		48.1
(-1.2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 34.8
(-3)
P 		64.7
(2.4)
P 		35.4
(-2.9)
P 		41.9
(-1.7)
P 		64.4
(2.3)
P 		68
(3)
P 		33
B 105.2
(3)
P 		55.8
(-0.5)
P 		21.3
(-3)
P 		44.2
(-1.4)
P 		63.9
(0)
P 		75.3
(0.9)
P 		84
C 77.1
(1)
P 		45.6
(-2)
P 		34.9
(-3)
P 		43
(-2.2)
P 		55.2
(-1.1)
P 		98.5
(3)
P 		64
avr 72.4
(2) 		55.4
(-0) 		30.5
(-3) 		43
(-1.5) 		61.2
(0.7) 		80.6
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27500
Sequence Type Exemplar sequence
Representative Public ID AU114376 NCBI
Target Description AU114376_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114376 /DEF=Caenorhabditis elegans cDNA clone:yk718d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170811 NCBI Caenorhabditis elegans Y51F10.10 (Y51F10.10) mRNA, complete cds. 11/11 None
Y51F10.10 ENSEMBL cdna:known chromosome:CEL140:I:1950664:1958505:-1 gene:Y51F10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000393 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1950663-1951185(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51F10.10
Entrez Gene 245997 Entrez gene
SwissProt Q8WTK0 EMBL-EBI
WormBase CE31380 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740794 Y51F10.10 [Caenorhabditis elegans] gb|AAL35728.2| Hypothetical protein Y51F10.10 [Caenorhabditis elegans] 1.0E-171
blast CAE74403 Hypothetical protein CBG22135 [Caenorhabditis briggsae] 8.0E-62
Sequence
Target Sequence 
>C. ELEGANS:173152_AT
ctccattgatgaaacgttgccgttcttgattcaatgcaatttaagcgataaaatggttat
cctctcctactcggaagtttgttcaaatctcctcaaaatgggatttccccgaccccaaat
cttcgaagccgtggcagtggagaaaggcgatcagaatcgagcattaagccgacttttgcc
aaattcctgatttcattattattcaaaaaacaatttttaatcaattttctgtcgatttgt
tttcttccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCATTGATGAAACGTTGCCGTTC 114 235 13 Antisense
AACGTTGCCGTTCTTGATTCAATGC 16 145 25 Antisense
ATAAAATGGTTATCCTCTCCTACTC 362 23 60 Antisense
TTATCCTCTCCTACTCGGAAGTTTG 698 679 69 Antisense
GGAAGTTTGTTCAAATCTCCTCAAA 591 531 85 Antisense
CCCCAAATCTTCGAAGCCGTGGCAG 472 261 125 Antisense
GTGGCAGTGGAGAAAGGCGATCAGA 696 487 143 Antisense
GAATCGAGCATTAAGCCGACTTTTG 502 329 166 Antisense
AGCCGACTTTTGCCAAATTCCTGAT 268 83 179 Antisense
AATTCCTGATTTCATTATTATTCAA 300 177 194 Antisense
TTTCTGTCGATTTGTTTTCTTCCAC 275 671 238 Antisense
Sequence Source Affymetrix Proprietary Database