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[173151_s_at]

Description AU114293_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114293 /DEF=Caenorhabditis elegans cDNA clone:yk717d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 89      6grp_total > 66      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8278
1 2 3 4 range
A 335
(-3)
P 		800
(-2.6)
P 		929.1
(-2.5)
P 		7275
(3)
P 		6940
B 333.5
(-3)
P 		688.6
(-2.7)
P 		962.3
(-2.5)
P 		7394.8
(3)
P 		7061
C 293.2
(-3)
P 		667.7
(-2.7)
P 		980.9
(-2.5)
P 		8571.4
(3)
P 		8278
avr 320.6
(-3) 		718.8
(-2.7) 		957.4
(-2.5) 		7747.1
(3) 		7427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4117
1 2 3 4 5 6 range
A 668.1
(-3)
P 		702
(-2.9)
P 		1847
(-0.1)
P 		1066.8
(-2)
P 		759.8
(-2.8)
P 		3136.2
(3)
P 		2468
B 782.9
(-3)
P 		987.1
(-2.7)
P 		1915.1
(-1.1)
P 		963.2
(-2.7)
P 		1004.8
(-2.6)
P 		4384.3
(3)
P 		3601
C 650.4
(-3)
P 		998.7
(-2.5)
P 		1045.1
(-2.4)
P 		1121.1
(-2.3)
P 		713.8
(-2.9)
P 		4767.6
(3)
P 		4117
avr 700.5
(-3) 		895.9
(-2.7) 		1602.4
(-1.4) 		1050.4
(-2.4) 		826.1
(-2.8) 		4096
(3) 		3396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1479
1 2 3 4 range
A 122
(-3)
P 		173.7
(-2.7)
P 		242.9
(-2.2)
P 		1064.9
(3)
P 		943
B 106.4
(-3)
P 		170.1
(-2.7)
P 		223
(-2.5)
P 		1575.8
(3)
P 		1469
C 97.1
(-3)
P 		192
(-2.6)
P 		341.9
(-1.9)
P 		1445.3
(3)
P 		1348
avr 108.5
(-3) 		178.6
(-2.7) 		269.3
(-2.2) 		1362
(3) 		1254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1512
1 2 3 4 5 6 range
A 123.2
(-3)
P 		249.7
(-1.8)
P 		402.2
(-0.4)
P 		270.6
(-1.6)
P 		229.3
(-2)
P 		763.6
(3)
P 		640
B 272.4
(-2.9)
P 		328.5
(-2.7)
P 		465
(-2.1)
P 		255.1
(-3)
P 		408.2
(-2.3)
P 		1634.9
(3)
P 		1380
C 241.1
(-2.9)
P 		304.7
(-2.7)
P 		266
(-2.8)
P 		225.4
(-3)
P 		231
(-3)
P 		1596
(3)
P 		1371
avr 212.2
(-3) 		294.3
(-2.6) 		377.7
(-2.1) 		250.4
(-2.8) 		289.5
(-2.6) 		1331.5
(3) 		1119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173151_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27497
Sequence Type Exemplar sequence
Representative Public ID AU114293 NCBI
Target Description AU114293_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU114293 /DEF=Caenorhabditis elegans cDNA clone:yk717d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062674(11), NM_062678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062674 NCBI Caenorhabditis elegans C17C3.1a (C17C3.1) mRNA, complete cds. 11/11 A 
NM_062678 NCBI Caenorhabditis elegans C17C3.1b (C17C3.1) mRNA, complete cds. 11/11 A 
SNAP00000005298 ENSEMBL cdna:SNAP chromosome:CEL140:II:5572675:5574617:1 11/11 None
C17C3.1a ENSEMBL cdna:known chromosome:CEL140:II:5570855:5574913:1 gene:C17C3.1 11/11 A 
C17C3.1b ENSEMBL cdna:known chromosome:CEL140:II:5572299:5574617:1 gene:C17C3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005308 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173942 4 2 NM_062674 173151_s_at (11), 187825_s_at (11)
NM_062678 173151_s_at (11), 187825_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5574420-5574681(+) 87.0 87.0
Public Domain and Genome References
Ensembl C17C3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31428 Hypothetical protein C17C3.1a [Caenorhabditis elegans] ref|NP_495075.1| C17C3.1a [Caenorhabditis elegans] 0.0
blast AAK31429 Hypothetical protein C17C3.1b [Caenorhabditis elegans] ref|NP_495079.1| C17C3.1b [Caenorhabditis elegans] 0.0
blast T15540 hypothetical protein C17C3.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.7E-14
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.1E-16
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.7E-14
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.1E-16
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.7E-14
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 3.1E-16
Sequence
Target Sequence 
>C. ELEGANS:173151_S_AT
gtatggttccatagatcagaagttaaagcagatgaatggcttctgtttgagtgcaaatca
cgcattgcatctggatcgcgagcaacaattgaaggaagaatttggagaagagatggtgtt
ttaattgcaagctgtcagcaggaagcacttgttagaagtaaatctgatgaaccgtcaaag
ttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGGTTCCATAGATCAGAAGTTA 53 455 22 Antisense
GATGAATGGCTTCTGTTTGAGTGCA 283 413 52 Antisense
GCTTCTGTTTGAGTGCAAATCACGC 515 305 60 Antisense
AAATCACGCATTGCATCTGGATCGC 380 117 76 Antisense
ACGCATTGCATCTGGATCGCGAGCA 97 93 81 Antisense
GCATCTGGATCGCGAGCAACAATTG 96 309 88 Antisense
GGATCGCGAGCAACAATTGAAGGAA 137 513 94 Antisense
GATGGTGTTTTAATTGCAAGCTGTC 177 409 133 Antisense
GCAAGCTGTCAGCAGGAAGCACTTG 93 321 148 Antisense
GTCAGCAGGAAGCACTTGTTAGAAG 315 465 155 Antisense
AAATCTGATGAACCGTCAAAGTTGT 119 115 181 Antisense
Sequence Source Affymetrix Proprietary Database