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[173150_at]

Description AV181734_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181734 /DEF=Caenorhabditis elegans cDNA clone:yk624b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 06      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 275.8
(2)
P 		113.9
(-3)
P 		220.1
(0.3)
P 		307.1
(3)
P 		193
B 324.8
(1.3)
P 		218.4
(-2.3)
P 		199.3
(-3)
P 		375.5
(3)
P 		176
C 250.3
(-0.9)
P 		202.6
(-2.8)
P 		198
(-3)
P 		349.7
(3)
P 		152
avr 283.6
(0.8) 		178.3
(-3) 		205.8
(-2) 		344.1
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 266.3
(3)
P 		245.5
(2.1)
P 		216.8
(0.9)
P 		126.1
(-3)
P 		168.5
(-1.2)
P 		155.3
(-1.8)
P 		140
B 355.8
(3)
P 		307.7
(1.5)
P 		158
(-3)
P 		160.4
(-2.9)
P 		208.6
(-1.5)
P 		173.8
(-2.5)
P 		198
C 298.5
(0.4)
P 		433
(3)
P 		149.5
(-2.4)
P 		117.1
(-3)
P 		142
(-2.5)
P 		199.9
(-1.4)
P 		316
avr 306.9
(2.3) 		328.7
(3) 		174.8
(-1.8) 		134.5
(-3) 		173
(-1.8) 		176.3
(-1.7) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 100.4
(3)
P 		24.7
(-3)
P 		57.6
(-0.4)
P 		45
(-1.4)
P 		76
B 103.6
(3)
P 		53.9
(-2.2)
P 		46.2
(-3)
P 		80
(0.5)
P 		57
C 82.8
(3)
P 		58.2
(-3)
P 		69
(-0.4)
P 		59
(-2.8)
P 		25
avr 95.6
(3) 		45.6
(-3) 		57.6
(-1.6) 		61.3
(-1.1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 49.1
(-1.1)
P 		87.3
(3)
P 		47.2
(-1.4)
P 		32
(-3)
P 		50.8
(-1)
P 		37.8
(-2.4)
P 		55
B 123.8
(3)
P 		102.4
(1.5)
P 		38.4
(-3)
P 		42.5
(-2.7)
P 		84.8
(0.3)
P 		64.8
(-1.1)
P 		85
C 110.6
(1.8)
P 		132.1
(3)
P 		38.1
(-2.2)
P 		23.5
(-3)
P 		46
(-1.8)
P 		66.9
(-0.6)
P 		109
avr 94.5
(2) 		107.3
(3) 		41.2
(-2.3) 		32.7
(-3) 		60.5
(-0.8) 		56.5
(-1.1) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26765
Sequence Type Exemplar sequence
Representative Public ID AV181734 NCBI
Target Description AV181734_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV181734 /DEF=Caenorhabditis elegans cDNA clone:yk624b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F13B12.6 ENSEMBL cdna:known chromosome:CEL140:IV:10414045:10417853:-1 gene:F13B12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10414109-10414372(-) 87.0 87.0
Public Domain and Genome References
Ensembl F13B12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21656 Hypothetical protein F13B12.6 [Caenorhabditis elegans] emb|CAD21626.1| Hypothetical protein F13B12.6 [Caenorhabditis elegans] ref|NP_741483.1| F13B12.6 [Caenorhabditis elegans] 0.0
blast CAE63823 Hypothetical protein CBG08374 [Caenorhabditis briggsae] 0.0
blast AAH82982 SH2D4A protein [Homo sapiens] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 4.6E-17
Sequence
Target Sequence 
>C. ELEGANS:173150_AT
gatctcacttccttcatgtgttgtattgaattgaaaaaagtttgaagcaagtgcgccctt
tcggattcactgaatttttgttttgaatatgtaatagttgtttcaaaaggaaatgatacg
actattagctactttaaattcgcatttctttctctttatcaattcatttcaacactcgat
catccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCACTTCCTTCATGTGTTGTA 562 419 33 Antisense
TCACTTCCTTCATGTGTTGTATTGA 646 627 37 Antisense
AAGTTTGAAGCAAGTGCGCCCTTTC 131 157 70 Antisense
CGCCCTTTCGGATTCACTGAATTTT 260 257 86 Antisense
GGAAATGATACGACTATTAGCTACT 529 527 141 Antisense
GATACGACTATTAGCTACTTTAAAT 112 425 147 Antisense
GCTACTTTAAATTCGCATTTCTTTC 381 303 160 Antisense
TTCGCATTTCTTTCTCTTTATCAAT 376 697 171 Antisense
TTCTTTCTCTTTATCAATTCATTTC 281 691 178 Antisense
AATTCATTTCAACACTCGATCATCC 179 177 193 Antisense
TCATTTCAACACTCGATCATCCGCT 38 621 196 Antisense
Sequence Source Affymetrix Proprietary Database