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[173149_at]

Description AU113969_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113969 /DEF=Caenorhabditis elegans cDNA clone:yk713f8 : 3prime end, single read.
Cluster 4grp_high_8_8 > 11      6grp_total > 56      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 119.5
(1.5)
P 		74.3
(-2.1)
P 		63.2
(-3)
P 		139.1
(3)
P 		76
B 84.8
(0.3)
P 		57.8
(-2.8)
A 		55.9
(-3)
P 		109.1
(3)
P 		53
C 136.9
(1.6)
P 		65.4
(-2.4)
P 		54.7
(-3)
P 		161.3
(3)
P 		107
avr 113.7
(1.3) 		65.8
(-2.4) 		57.9
(-3) 		136.5
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 48.6
(0.8)
A 		18.6
(-2)
A 		72.1
(3)
P 		8.3
(-3)
A 		9.3
(-2.9)
A 		8.2
(-3)
A 		64
B 36.9
(-1.6)
A 		22.6
(-3)
A 		33.9
(-1.9)
P 		37.4
(-1.5)
A 		22.1
(-3)
A 		85.1
(3)
P 		63
C 14.4
(-2.5)
A 		51
(-0.3)
P 		7.2
(-2.9)
A 		5.2
(-3)
A 		8.8
(-2.8)
A 		107.8
(3)
P 		103
avr 33.3
(-0.8) 		30.7
(-1.1) 		37.7
(-0.3) 		17
(-2.6) 		13.4
(-3) 		67
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 43.5
(3)
P 		16.1
(-3)
P 		16.5
(-2.9)
P 		20.4
(-2.1)
P 		27
B 27
(3)
P 		14.3
(-2.4)
A 		13
(-3)
P 		23.3
(1.4)
P 		14
C 45.3
(3)
P 		18.8
(-3)
P 		19.1
(-2.9)
P 		27.2
(-1.1)
P 		27
avr 38.6
(3) 		16.4
(-2.9) 		16.2
(-3) 		23.6
(-1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9
(0.1)
A 		6.6
(-1)
A 		15.7
(3)
P 		2.1
(-3)
A 		2.8
(-2.6)
A 		2
(-3)
A 		14
B 12.8
(-1.7)
A 		7.5
(-3)
A 		8.2
(-2.8)
P 		9.9
(-2.4)
A 		9
(-2.6)
A 		31.7
(3)
P 		24
C 5.3
(-2.3)
A 		15.5
(-0.5)
P 		1.8
(-2.9)
A 		1.1
(-3)
A 		2.9
(-2.7)
A 		36.1
(3)
P 		35
avr 9
(-1.5) 		9.9
(-1.3) 		8.6
(-1.7) 		4.4
(-3) 		4.9
(-2.8) 		23.3
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27488
Sequence Type Exemplar sequence
Representative Public ID AU113969 NCBI
Target Description AU113969_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113969 /DEF=Caenorhabditis elegans cDNA clone:yk713f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU113969
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU113969 AU113969_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113969 /DEF=Caenorhabditis elegans cDNA clone:yk713f8 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15074100-15074322(+) 74.0 74.0
Sequence
Target Sequence 
>C. ELEGANS:173149_AT
gagttaaggtgcctaacttctcgctcatgagaccccataaaaggtgttggttgatattga
cagcaggacggtggccatggaagtcggtatccgctaaggagtgtgtaacaactcacctgc
cgaatcaactagccctgaaaatggatggcgcttaagcgagagacctatactccgccgttg
cgacatgtgcgttgtctagcgccaggtcgtaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTAAGGTGCCTAACTTCTCGCT 143 399 14 Antisense
TTCTCGCTCATGAGACCCCATAAAA 577 691 31 Antisense
TTGACAGCAGGACGGTGGCCATGGA 630 701 70 Antisense
GGTGGCCATGGAAGTCGGTATCCGC 488 497 83 Antisense
GTCGGTATCCGCTAAGGAGTGTGTA 21 471 96 Antisense
GGAGTGTGTAACAACTCACCTGCCG 373 517 111 Antisense
TGCCGAATCAACTAGCCCTGAAAAT 194 585 131 Antisense
CCCTGAAAATGGATGGCGCTTAAGC 415 259 146 Antisense
TTAAGCGAGAGACCTATACTCCGCC 123 681 165 Antisense
GCCGTTGCGACATGTGCGTTGTCTA 644 283 187 Antisense
TTGTCTAGCGCCAGGTCGTAACGAG 261 699 205 Antisense
Sequence Source Affymetrix Proprietary Database