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[173145_at]

Description AU113419_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113419 /DEF=Caenorhabditis elegans cDNA clone:yk707c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_high_8_8 > 52      6grp_highest_nonorm > 91      6grp_total > 94      4grp_total > 59      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 233.9
(0.6)
P 		355.9
(3)
P 		228
(0.5)
P 		53.7
(-3)
M 		302
B 238.8
(1.4)
P 		327.9
(3)
P 		267.5
(1.9)
P 		1.5
(-3)
A 		326
C 283.2
(1.2)
P 		359.8
(2.5)
P 		388.7
(3)
P 		35.7
(-3)
P 		353
avr 252
(1.2) 		347.9
(3) 		294.7
(2) 		30.3
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 97.7
(-3)
P 		96.8
(-3)
P 		117.8
(-2.4)
P 		184
(-0.4)
P 		297.6
(3)
P 		167.4
(-0.9)
P 		201
B 135.6
(-3)
P 		137.7
(-2.9)
P 		155.6
(-2.4)
P 		164.7
(-2.1)
P 		323.5
(3)
P 		215.5
(-0.4)
P 		188
C 162.1
(-0.6)
P 		124.4
(-1.8)
P 		83.5
(-3)
P 		152.4
(-0.9)
P 		282.2
(3)
P 		202.2
(0.6)
P 		199
avr 131.8
(-2.6) 		119.6
(-3) 		119
(-3) 		167
(-1.4) 		301.1
(3) 		195
(-0.5) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 85.2
(3)
P 		77.3
(2.4)
P 		59.6
(1)
P 		7.9
(-3)
M 		77
B 76.1
(2.6)
P 		81
(3)
P 		62
(1.6)
P 		0.3
(-3)
A 		81
C 93.7
(1.1)
P 		103.4
(1.5)
P 		135.5
(3)
P 		6
(-3)
P 		130
avr 85
(2.8) 		87.2
(3) 		85.7
(2.9) 		4.7
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 18
(-3)
P 		34.4
(-1.6)
P 		25.7
(-2.4)
P 		46.7
(-0.6)
P 		89.8
(3)
P 		40.8
(-1.1)
P 		72
B 47.2
(-2.4)
P 		45.8
(-2.5)
P 		37.8
(-3)
P 		43.6
(-2.6)
P 		131.4
(3)
P 		80.4
(-0.3)
P 		94
C 60.1
(0.3)
P 		38
(-1.6)
P 		21.3
(-3)
P 		30.6
(-2.2)
P 		91.3
(3)
P 		67.7
(1)
P 		70
avr 41.8
(-1.9) 		39.4
(-2.1) 		28.3
(-3) 		40.3
(-2.1) 		104.2
(3) 		63
(-0.3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27482
Sequence Type Exemplar sequence
Representative Public ID AU113419 NCBI
Target Description AU113419_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113419 /DEF=Caenorhabditis elegans cDNA clone:yk707c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029117 ENSEMBL cdna:SNAP chromosome:CEL140:I:10522315:10522485:1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10522226-10522408(+) 75.83 75.83
Sequence
Target Sequence 
>C. ELEGANS:173145_AT
tggcctactggatcaactacttcaaaaataatgagaattcttctgattctccttatttta
ttctcttttgcctacgcagtttctgctgaagaagaacaacatcactctgaaggacatgct
aaaatggtggatattctgagattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCTACTGGATCAACTACTTCAA 444 543 60 Antisense
CTACTGGATCAACTACTTCAAAAAT 619 223 64 Antisense
AATTCTTCTGATTCTCCTTATTTTA 314 177 95 Antisense
TTCTGATTCTCCTTATTTTATTCTC 575 693 100 Antisense
TGATTCTCCTTATTTTATTCTCTTT 139 565 103 Antisense
TTTATTCTCTTTTGCCTACGCAGTT 693 671 116 Antisense
CTTTTGCCTACGCAGTTTCTGCTGA 115 223 124 Antisense
GCCTACGCAGTTTCTGCTGAAGAAG 691 281 129 Antisense
GAAGAACAACATCACTCTGAAGGAC 43 341 150 Antisense
CACTCTGAAGGACATGCTAAAATGG 83 197 162 Antisense
AAATGGTGGATATTCTGAGATTCAA 116 121 181 Antisense
Sequence Source Affymetrix Proprietary Database