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[173144_at]

Description AU113368_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113368 /DEF=Caenorhabditis elegans cDNA clone:yk706f3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 63      6grp_total > 82      4grp_total > 62      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2130
1 2 3 4 range
A 2166.6
(3)
P 		1150.8
(0)
P 		1586.9
(1.3)
P 		133.2
(-3)
P 		2033
B 2049.7
(3)
P 		1131.4
(0.2)
P 		1504.6
(1.4)
P 		65.1
(-3)
P 		1985
C 2194.8
(3)
P 		998
(-0.5)
P 		1273.8
(0.3)
P 		136
(-3)
P 		2059
avr 2137
(3) 		1093.4
(-0.1) 		1455.1
(1) 		111.4
(-3) 		2026

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 375
(-3)
P 		518.1
(-0.9)
P 		549.5
(-0.5)
P 		792.2
(3)
P 		649.1
(0.9)
P 		414.3
(-2.4)
P 		417
B 489.4
(-0.8)
P 		533.1
(-0.1)
P 		637.7
(1.4)
P 		718.5
(2.5)
P 		749.9
(3)
P 		335.2
(-3)
P 		415
C 531.5
(-0.4)
P 		480
(-0.9)
P 		569.4
(-0)
P 		627.9
(0.5)
P 		887.7
(3)
P 		256.7
(-3)
P 		631
avr 465.3
(-1.2) 		510.4
(-0.5) 		585.5
(0.5) 		712.9
(2.3) 		762.2
(3) 		335.4
(-3) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 775
1 2 3 4 range
A 788.9
(3)
P 		249.8
(-1.2)
P 		414.8
(0.1)
P 		19.5
(-3)
P 		769
B 653.6
(3)
P 		279.4
(-0.5)
P 		348.6
(0.1)
P 		13.9
(-3)
P 		640
C 726.5
(3)
P 		286.9
(-0.7)
P 		444
(0.6)
P 		22.9
(-3)
P 		704
avr 723
(3) 		272
(-0.8) 		402.5
(0.3) 		18.8
(-3) 		704

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 69.1
(-3)
P 		184.3
(2.2)
P 		119.7
(-0.7)
P 		200.9
(3)
P 		195.9
(2.8)
P 		100.9
(-1.6)
P 		132
B 170.3
(-1.5)
P 		177.4
(-1.3)
P 		154.9
(-2)
P 		190.3
(-0.8)
P 		304.7
(3)
P 		125
(-3)
P 		180
C 197
(0.3)
P 		146.5
(-1.2)
P 		144.9
(-1.2)
P 		126.3
(-1.8)
P 		287.2
(3)
P 		85.9
(-3)
P 		201
avr 145.5
(-1.4) 		169.4
(-0.5) 		139.8
(-1.6) 		172.5
(-0.4) 		262.6
(3) 		103.9
(-3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27481
Sequence Type Exemplar sequence
Representative Public ID AU113368 NCBI
Target Description AU113368_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU113368 /DEF=Caenorhabditis elegans cDNA clone:yk706f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067861 NCBI Caenorhabditis elegans Y54G2A.6 (Y54G2A.6) mRNA, complete cds. 11/11 None
SNAP00000036494 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2854387:2855417:1 11/11 None
GENEFINDER00000036582 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2854286:2855417:1 11/11 None
Y54G2A.6 ENSEMBL cdna:known chromosome:CEL140:IV:2854387:2855444:1 gene:Y54G2A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2854877-2855390(+) 90.67 90.67
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.6
Entrez Gene 177068 Entrez gene
SwissProt Q95XX2 EMBL-EBI
WormBase CE27494 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68530 Hypothetical protein Y54G2A.6 [Caenorhabditis elegans] ref|NP_500262.1| Y54G2A.6 [Caenorhabditis elegans] 1.0E-164
blast AAK68530 Hypothetical protein Y54G2A.6 [Caenorhabditis elegans] ref|NP_500262.1| Y54G2A.6 [Caenorhabditis elegans] 1.0E-161
blast CAE58081 Hypothetical protein CBG01162 [Caenorhabditis briggsae] 3.0E-73
blast AAF39840 Hypothetical protein F56A4.2 [Caenorhabditis elegans] ref|NP_503676.1| F56A4.2 [Caenorhabditis elegans] ref|NP_503650.1| Y19D10A.9 [Caenorhabditis elegans] gb|AAK68422.1| Hypothetical protein Y19D10A.9 [Caenorhabditis elegans] 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 3.0E-8
Sequence
Target Sequence 
>C. ELEGANS:173144_AT
gaaggagcttccatatgtctgtagttacgatccaaagtactttacagctggaccaccggg
atcaactccgaactatggatcgactggctacccggtgtcttacccagtctccggagcaac
agaatacccagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAGCTTCCATATGTCTGTAGT 664 333 15 Antisense
GGAGCTTCCATATGTCTGTAGTTAC 435 521 18 Antisense
GCTTCCATATGTCTGTAGTTACGAT 31 305 21 Antisense
GTCTGTAGTTACGATCCAAAGTACT 511 471 31 Antisense
CAAAGTACTTTACAGCTGGACCACC 609 189 47 Antisense
ACCACCGGGATCAACTCCGAACTAT 280 85 66 Antisense
ATCAACTCCGAACTATGGATCGACT 709 25 75 Antisense
CGAACTATGGATCGACTGGCTACCC 300 251 83 Antisense
TTACCCAGTCTCCGGAGCAACAGAA 328 681 114 Antisense
CAGTCTCCGGAGCAACAGAATACCC 334 207 119 Antisense
CTCCGGAGCAACAGAATACCCAGCT 709 229 123 Antisense
Sequence Source Affymetrix Proprietary Database