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[173142_at]

Description AV199424_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199424 /DEF=Caenorhabditis elegans cDNA clone:yk545g6 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 35.8
(-1)
M 		4.2
(-3)
A 		60.2
(0.6)
P 		97.7
(3)
A 		94
B 24.9
(1)
A 		8.5
(-3)
A 		33.2
(3)
A 		9.3
(-2.8)
A 		25
C 40.3
(2.5)
A 		36.1
(1.7)
A 		42.9
(3)
P 		11.6
(-3)
A 		31
avr 33.7
(0.6) 		16.3
(-3) 		45.4
(3) 		39.5
(1.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1214
1 2 3 4 5 6 range
A 14.6
(-3)
A 		15.4
(-3)
A 		30.3
(-2.9)
A 		62
(-2.7)
M 		506.7
(0)
P 		996.7
(3)
P 		982
B 3.3
(-3)
A 		25.1
(-2.9)
A 		37.6
(-2.8)
A 		122.3
(-2.4)
P 		608
(-0)
P 		1216.6
(3)
P 		1213
C 2.2
(-3)
A 		5.2
(-3)
A 		40.7
(-2.8)
A 		136.5
(-2.1)
P 		758.1
(1.8)
P 		941.4
(3)
P 		939
avr 6.7
(-3) 		15.2
(-3) 		36.2
(-2.8) 		106.9
(-2.4) 		624.3
(0.5) 		1051.6
(3) 		1045
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.1
(1.9)
M 		0.9
(-3)
A 		15.7
(3)
P 		14.3
(2.4)
A 		15
B 8
(3)
A 		2.1
(-2.9)
A 		7.7
(2.7)
A 		2
(-3)
A 		6
C 13.4
(2.3)
A 		10.4
(0.9)
A 		14.9
(3)
P 		2
(-3)
A 		13
avr 11.5
(2.1) 		4.5
(-3) 		12.8
(3) 		6.1
(-1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 2.7
(-3)
A 		5.5
(-2.9)
A 		6.6
(-2.9)
A 		15.7
(-2.7)
M 		152.9
(0.8)
P 		242.7
(3)
P 		240
B 1.1
(-3)
A 		8.4
(-2.9)
A 		9.1
(-2.9)
A 		32.4
(-2.6)
P 		247
(0.3)
P 		453.7
(3)
P 		453
C 0.8
(-3)
A 		1.6
(-3)
A 		10.4
(-2.8)
A 		27.5
(-2.5)
P 		245.3
(1.7)
P 		315.1
(3)
P 		314
avr 1.5
(-3) 		5.2
(-2.9) 		8.7
(-2.9) 		25.2
(-2.6) 		215.1
(0.8) 		337.2
(3) 		336
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26950
Sequence Type Exemplar sequence
Representative Public ID AV199424 NCBI
Target Description AV199424_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199424 /DEF=Caenorhabditis elegans cDNA clone:yk545g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069744
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H02I12.1 ENSEMBL cdna:known chromosome:CEL140:IV:11372962:11377568:1 gene:H02I12.1 A 
NM_069744 NCBI Caenorhabditis elegans H02I12.1 (H02I12.1) mRNA, complete cds. A 
GENEFINDER00000036333 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11372965:11377340:1 None
SNAP00000036319 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11372965:11377340:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11377303-11377514(+) 70.33 70.33
Public Domain and Genome References
Gene Title
Ensembl H02I12.1
Entrez Gene 178061 Entrez gene
SwissProt O45599 EMBL-EBI
WormBase CE37527 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07215 Hypothetical protein H02I12.1 [Caenorhabditis elegans] ref|NP_502145.2| H02I12.1 [Caenorhabditis elegans] 0.0
blast CAE63911 Hypothetical protein CBG08482 [Caenorhabditis briggsae] 0.0
blast CAE58519 Hypothetical protein CBG01670 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.5E-5
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.9E-14
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.9E-14
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-10
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 7.2E-20
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.4E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.8E-10
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.0E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.7E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.2E-21
Sequence
Target Sequence 
>C. ELEGANS:173142_AT
ctaaagggaaccaaaagctggagctccaccgcggtggcggccgctctagaactagtggat
cccccgggctgcaggattcggcacgagatacggcagttcgacgtacaatgatgataaatc
gggatattgataagttgttctaaacacccccattccgcaaactaatctaatctttacatg
tactaactttattgcatttgatctcttgagctaatcagctattattcagcatcattccct
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAAAGGGAACCAAAAGCTGGAGCT 708 139 15 Antisense
GATTCGGCACGAGATACGGCAGTTC 292 431 89 Antisense
TCGGCACGAGATACGGCAGTTCGAC 554 607 92 Antisense
GATAAGTTGTTCTAAACACCCCCAT 339 419 143 Antisense
CCCCATTCCGCAAACTAATCTAATC 455 261 162 Antisense
ACTAATCTAATCTTTACATGTACTA 289 99 175 Antisense
GTACTAACTTTATTGCATTTGATCT 573 459 194 Antisense
TATTGCATTTGATCTCTTGAGCTAA 112 665 204 Antisense
TTTGATCTCTTGAGCTAATCAGCTA 54 663 211 Antisense
GAGCTAATCAGCTATTATTCAGCAT 158 387 222 Antisense
GCTATTATTCAGCATCATTCCCTTC 106 305 232 Antisense
Sequence Source Affymetrix Proprietary Database