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[173140_at]

Description AV200532_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200532 /DEF=Caenorhabditis elegans cDNA clone:yk576f3 : 3prime end, single read.
Cluster 6grp_total > 11      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 3.3
(-3)
A 		55.4
(3)
A 		4
(-2.9)
A 		50.1
(2.4)
A 		52
B 4.4
(-3)
A 		16.9
(0)
A 		7.8
(-2.2)
A 		29.2
(3)
A 		25
C 8.6
(-2.8)
A 		7.2
(-3)
A 		19.1
(-0.9)
A 		41
(3)
A 		34
avr 5.4
(-3) 		26.5
(0.6) 		10.3
(-2.2) 		40.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 26.1
(1.3)
A 		8.5
(-1.8)
A 		11.8
(-1.2)
A 		2.9
(-2.8)
A 		35.8
(3)
A 		1.7
(-3)
A 		34
B 9.6
(-2.2)
A 		54.5
(2.9)
A 		55.4
(3)
A 		13.2
(-1.8)
A 		2.1
(-3)
A 		6.2
(-2.5)
A 		53
C 2.1
(-3)
A 		58.4
(3)
A 		3.5
(-2.9)
A 		13.9
(-1.7)
A 		3.1
(-2.9)
A 		3.5
(-2.9)
A 		56
avr 12.6
(-1.6) 		40.5
(3) 		23.6
(0.2) 		10
(-2) 		13.7
(-1.4) 		3.8
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.2
(-2.9)
A 		12
(3)
A 		1
(-3)
A 		7.3
(0.4)
A 		11
B 1.4
(-3)
A 		4.2
(0.5)
A 		1.8
(-2.5)
A 		6.2
(3)
A 		5
C 2.8
(-2.1)
A 		2.1
(-3)
A 		6.6
(2.6)
A 		6.9
(3)
A 		5
avr 1.8
(-3) 		6.1
(2.2) 		3.1
(-1.4) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.8
(-0.5)
A 		3
(-1.5)
A 		2.6
(-1.7)
A 		0.7
(-2.8)
A 		10.8
(3)
A 		0.4
(-3)
A 		10
B 3.3
(-2.2)
A 		18.1
(3)
A 		13.5
(1.4)
A 		3.5
(-2.1)
A 		0.9
(-3)
A 		2.3
(-2.5)
A 		17
C 0.8
(-3)
A 		17.8
(3)
A 		0.9
(-3)
A 		2.8
(-2.3)
A 		1
(-2.9)
A 		1.2
(-2.9)
A 		17
avr 3
(-2.1) 		13
(3) 		5.7
(-0.7) 		2.3
(-2.5) 		4.2
(-1.5) 		1.3
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27007
Sequence Type Exemplar sequence
Representative Public ID AV200532 NCBI
Target Description AV200532_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200532 /DEF=Caenorhabditis elegans cDNA clone:yk576f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200532
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200532 AV200532_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200532 /DEF=Caenorhabditis elegans cDNA clone:yk576f3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075511 11/11 Negative Strand Matching Probes A 
GENEFINDER00000015583 11/11 Negative Strand Matching Probes None
ZC15.7 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20286370-20286955(+) 81.33 81.33
Sequence
Target Sequence 
>C. ELEGANS:173140_AT
gcttgcagttgtactgggtagcccagtggagtacggtagctttatnataatcggtaagtc
ggaggagggcttctttttnnacacgtcgggttttcataataaattggaaattcttcaagt
tatctgtgatcgccgcgtgaaaaagaacgtttcttcccttgtcatctagaatttcccaaa
aatggtcaacatcagtgctaccattttta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGCAGTTGTACTGGGTAGCCCA 177 307 73 Antisense
TGGGTAGCCCAGTGGAGTACGGTAG 597 497 87 Antisense
TCGGTAAGTCGGAGGAGGGCTTCTT 219 489 123 Antisense
GAAATTCTTCAAGTTATCTGTGATC 593 363 179 Antisense
CTTCAAGTTATCTGTGATCGCCGCG 442 219 185 Antisense
GTTATCTGTGATCGCCGCGTGAAAA 467 447 191 Antisense
GATCGCCGCGTGAAAAAGAACGTTT 444 417 200 Antisense
GTTTCTTCCCTTGTCATCTAGAATT 224 451 221 Antisense
TCCCTTGTCATCTAGAATTTCCCAA 276 597 227 Antisense
AGAATTTCCCAAAAATGGTCAACAT 10 13 240 Antisense
GTCAACATCAGTGCTACCATTTTTA 121 465 257 Antisense
Sequence Source Affymetrix Proprietary Database