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[173138_s_at]

Description AV200407_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200407 /DEF=Caenorhabditis elegans cDNA clone:yk574h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 05      6grp_total > 33      4grp_total > 30      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5738
1 2 3 4 range
A 8377.3
(3)
P 		5309.7
(-0.4)
P 		2892.2
(-3)
P 		7160.8
(1.7)
P 		5485
B 8425.8
(3)
P 		4792.3
(-1.1)
P 		3045.9
(-3)
P 		5996.9
(0.3)
P 		5380
C 8630.6
(3)
P 		4244.1
(-1.6)
P 		2931.7
(-3)
P 		6073.1
(0.3)
P 		5699
avr 8477.9
(3) 		4782
(-1) 		2956.6
(-3) 		6410.3
(0.8) 		5521

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6238
1 2 3 4 5 6 range
A 9417.5
(2.8)
P 		8441.4
(1.8)
P 		9585.3
(3)
P 		6576.3
(-0.2)
P 		3947.9
(-3)
P 		4038.7
(-2.9)
P 		5637
B 6728.8
(0.4)
P 		7021.4
(0.7)
P 		9337.2
(3)
P 		5398.3
(-0.9)
P 		3580.3
(-2.8)
P 		3347.1
(-3)
P 		5990
C 7592.5
(1.2)
P 		7527
(1.1)
P 		9257
(3)
P 		5013.2
(-1.6)
P 		4426.6
(-2.2)
P 		3719.2
(-3)
P 		5538
avr 7912.9
(1.4) 		7663.3
(1.2) 		9393.2
(3) 		5662.6
(-0.9) 		3984.9
(-2.7) 		3701.7
(-3) 		5692
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2344
1 2 3 4 range
A 3050.2
(3)
P 		1152.6
(-2)
P 		756.1
(-3)
P 		1048.2
(-2.2)
P 		2294
B 2686.9
(3)
P 		1183.6
(-1.6)
P 		705.8
(-3)
P 		1277.9
(-1.3)
P 		1981
C 2857
(3)
P 		1220.2
(-2.4)
P 		1021.8
(-3)
P 		1024
(-3)
P 		1835
avr 2864.7
(3) 		1185.5
(-1.9) 		827.9
(-3) 		1116.7
(-2.1) 		2037

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2019
1 2 3 4 5 6 range
A 1736
(-0.8)
P 		3002.2
(3)
P 		2087.5
(0.3)
P 		1667.9
(-1)
P 		1191.3
(-2.4)
P 		983.3
(-3)
P 		2019
B 2341.3
(3)
P 		2337.1
(3)
P 		2267.3
(2.6)
P 		1429.8
(-2)
P 		1454.6
(-1.9)
P 		1248.1
(-3)
P 		1093
C 2814.2
(3)
P 		2296.7
(1.3)
P 		2356.1
(1.5)
P 		1008.2
(-3)
P 		1432.4
(-1.6)
P 		1245
(-2.2)
P 		1806
avr 2297.2
(1.9) 		2545.3
(3) 		2237
(1.7) 		1368.6
(-2.1) 		1359.4
(-2.1) 		1158.8
(-3) 		1387
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27002
Sequence Type Exemplar sequence
Representative Public ID AV200407 NCBI
Target Description AV200407_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200407 /DEF=Caenorhabditis elegans cDNA clone:yk574h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076752 NCBI Caenorhabditis elegans C53B7.3 (C53B7.3) mRNA, complete cds. 11/11 A 
SNAP00000013978 ENSEMBL cdna:SNAP chromosome:CEL140:X:6844628:6845865:1 11/11 None
GENEFINDER00000013987 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6844721:6845852:1 11/11 None
C53B7.3 ENSEMBL cdna:known chromosome:CEL140:X:6844707:6845922:1 gene:C53B7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6845610-6845861(+) 83.67 83.67
Public Domain and Genome References
Gene Title
Ensembl C53B7.3
Entrez Gene 180957 Entrez gene
SwissProt Q18804 EMBL-EBI
WormBase CE06973 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48274 Hypothetical protein C53B7.3 [Caenorhabditis elegans] ref|NP_509153.1| C53B7.3 [Caenorhabditis elegans] 3.0E-61
blast CAE65800 Hypothetical protein CBG10907 [Caenorhabditis briggsae] 5.0E-51
blast AAC48274 Hypothetical protein C53B7.3 [Caenorhabditis elegans] ref|NP_509153.1| C53B7.3 [Caenorhabditis elegans] 7.0E-49
blast CAE65800 Hypothetical protein CBG10907 [Caenorhabditis briggsae] 1.0E-46
blast AAC48274 Hypothetical protein C53B7.3 [Caenorhabditis elegans] ref|NP_509153.1| C53B7.3 [Caenorhabditis elegans] 2.0E-29
blast CAE65800 Hypothetical protein CBG10907 [Caenorhabditis briggsae] 5.0E-22
Sequence
Target Sequence 
>C. ELEGANS:173138_S_AT
acaacatgtgtcaatccaccggatcaaactctatgtacggaagtggctcatccggataca
acacttacggctctggaaacacntatggatcatccaactccagatgcacatacaactcgg
actgcggatctaatagatactgctcatctggatactgcaccagctacgtgctc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACATGTGTCAATCCACCGGATC 56 113 110 Antisense
ATCCACCGGATCAAACTCTATGTAC 1 41 123 Antisense
AACTCTATGTACGGAAGTGGCTCAT 688 139 136 Antisense
GAAGTGGCTCATCCGGATACAACAC 635 335 149 Antisense
GGATACAACACTTACGGCTCTGGAA 466 511 163 Antisense
ATCCAACTCCAGATGCACATACAAC 207 41 201 Antisense
GATGCACATACAACTCGGACTGCGG 509 411 212 Antisense
TACAACTCGGACTGCGGATCTAATA 306 639 220 Antisense
GGATCTAATAGATACTGCTCATCTG 146 513 235 Antisense
TACTGCTCATCTGGATACTGCACCA 146 647 247 Antisense
TGGATACTGCACCAGCTACGTGCTC 224 551 258 Antisense
Sequence Source Affymetrix Proprietary Database