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[173137_s_at] 14-3-3 protein

Description AV184534_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184534 /DEF=Caenorhabditis elegans cDNA clone:yk665h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 06      6grp_total > 44      4grp_total > 33      6grp_cgc > 91      6grp_high1_sub > 03      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6251
1 2 3 4 range
A 10118.1
(-3)
P 		14218.7
(1.6)
P 		14650.8
(2.1)
P 		15444.4
(3)
P 		5326
B 9193.5
(-3)
P 		13466.1
(1.4)
P 		15083.5
(3)
P 		14439.9
(2.3)
P 		5890
C 10812.1
(-3)
P 		14180.3
(3)
P 		13183.3
(1.2)
P 		14080.5
(2.8)
P 		3368
avr 10041.2
(-3) 		13955
(2.1) 		14305.9
(2.5) 		14654.9
(3) 		4614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4071
1 2 3 4 5 6 range
A 9109.5
(0.8)
P 		8715
(-0.1)
P 		10070.4
(3)
P 		8565.2
(-0.5)
P 		7481.4
(-3)
P 		8563.7
(-0.5)
P 		2589
B 9125.4
(-1.3)
P 		8968.3
(-1.6)
P 		11551.9
(3)
P 		8206.7
(-3)
P 		8188.7
(-3)
P 		8504.9
(-2.4)
P 		3363
C 9196.1
(2.2)
P 		9144.5
(2)
P 		9077.4
(1.7)
P 		7915.3
(-3)
P 		9390.7
(3)
P 		9101.8
(1.8)
P 		1475
avr 9143.7
(-0.3) 		8942.6
(-0.9) 		10233.2
(3) 		8229.1
(-3) 		8353.6
(-2.6) 		8723.5
(-1.5) 		2004
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2334
1 2 3 4 range
A 3684
(2.4)
P 		3086.5
(0.2)
P 		3830
(3)
P 		2260.8
(-3)
P 		1569
B 2931.7
(-3)
P 		3325.8
(1.2)
P 		3495.2
(3)
P 		3077.2
(-1.5)
P 		564
C 3579.1
(0.3)
P 		4076.9
(1.6)
P 		4594.8
(3)
P 		2374.2
(-3)
P 		2221
avr 3398.3
(0.5) 		3496.4
(1) 		3973.3
(3) 		2570.7
(-3) 		1403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1817
1 2 3 4 5 6 range
A 1679.3
(-3)
P 		3099.5
(3)
P 		2193.1
(-0.8)
P 		2172.3
(-0.9)
P 		2257.6
(-0.6)
P 		2085
(-1.3)
P 		1420
B 3175.2
(2.2)
P 		2985.2
(1.2)
P 		2805.1
(0.3)
P 		2173.7
(-3)
P 		3327
(3)
P 		3171.4
(2.2)
P 		1153
C 3408.6
(3)
P 		2790.3
(1)
P 		2310.4
(-0.6)
P 		1591.8
(-3)
P 		3038.7
(1.8)
P 		3046.9
(1.8)
P 		1817
avr 2754.4
(1.8) 		2958.3
(3) 		2436.2
(-0.2) 		1979.3
(-3) 		2874.4
(2.5) 		2767.8
(1.8) 		979
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173137_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26882
Sequence Type Exemplar sequence
Representative Public ID AV184534 NCBI
Target Description AV184534_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184534 /DEF=Caenorhabditis elegans cDNA clone:yk665h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069834(11), U05038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069834 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-5) (par-5) mRNA, complete cds. 11/11 A 
U05038 NCBI Caenorhabditis elegans Bristol N2 14-3-3 protein mRNA, complete cds. 11/11 A 
SNAP00000015384 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11820961:11821867:-1 11/11 None
GENEFINDER00000015393 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11820961:11821867:-1 11/11 None
M117.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:11820476:11821894:-1 gene:M117.2 11/11 A 
M117.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:11820476:11821887:-1 gene:M117.2 11/11 A 
M117.2.4 ENSEMBL cdna:known chromosome:CEL140:IV:11820501:11821894:-1 gene:M117.2 11/11 None
M117.2.3 ENSEMBL cdna:known chromosome:CEL140:IV:11820501:11821894:-1 gene:M117.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11821011-11821325(-) 88.0 88.0
Public Domain and Genome References
Gene Title 14-3-3 protein
Gene Symbol par-5
Ensembl M117.2
Entrez Gene 178113 Entrez gene
SwissProt P41932 EMBL-EBI
WormBase CE06200 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591859_AT similar to 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) cfa
CANINE_2:CFA.4344.1.S1_AT similar to 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) cfa
CANINE_2:CFAAFFX.14973.1.S1_S_AT similar to 14-3-3 protein beta/alpha (Protein kinase C inhibitor protein-1) (KCIP-1) cfa
CHICKEN:GGA.4816.1.S1_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide gga
HG-U133_PLUS_2:208743_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133A:208743_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133A_2:208743_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-FOCUS:208743_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U95AV2:32324_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133A:217718_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133_PLUS_2:217718_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133A_2:217718_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HU35KSUBD:RC_W80790_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HU35KSUBD:RC_AA442767_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HUGENEFL:X57346_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
U133_X3P:G7661715_3P_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
U133_X3P:G12655022_3P_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
U133_X3P:G12655022_3P_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
U133_X3P:HS.182238.0.A1_3P_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133A_2:217717_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133_PLUS_2:217717_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
HG-U133A:217717_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide hs
MOUSE430_2:1438708_X_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOE430A:1438708_X_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430A_2:1438708_X_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MU11KSUBB:MSA.37497.0_F_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MU11KSUBB:MSA.11382.0_I_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MU11KSUBB:MSA.11382.0_F_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MU11KSUBB:MSA.10201.0_F_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOE430A:1420878_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430A_2:1420878_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430_2:1420878_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOE430A:1436783_X_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430A_2:1436783_X_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430_2:1436783_X_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOE430A:1455815_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430A_2:1455815_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430_2:1455815_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOE430A:1420879_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430A_2:1420879_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430_2:1420879_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOE430A:1420880_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430A_2:1420880_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MOUSE430_2:1420880_A_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MG-U74AV2:98053_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide mm
MU19KSUBA:TC18424_AT Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA mm
MU19KSUBA:TC18425_AT Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA mm
MU19KSUBA:TC18425_G_AT Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (Ywhab), mRNA mm
RG-U34A:S55223_S_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide rn
RAE230A:1386999_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide rn
RAT230_2:1386999_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide rn
RAE230A:1398800_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide rn
RAT230_2:1398800_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide rn
RG-U34A:RC_AA924084_AT tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
19904 protein domain specific binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98138 Hypothetical protein M117.2 [Caenorhabditis elegans] ref|NP_502235.1| abnormal embryonic PARtitioning of cytoplasm family member (par-5) [Caenorhabditis elegans] 1.0E-135
blast P41932 14-3-3-like protein 1 gb|AAA61872.1| 14-3-3 protein 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR000308 EMBL-EBI 14-3-3 protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173137_S_AT
cccagaaggcttaccaggaggctcttgatatcgctaaggacaagatgcagccaacccacc
caattcgccttggacttgccctcaacttctctgtcttctacnacgagatcttgaacactc
cagagcacgcttgccaactcgcgaagcaggctttcgangatgctattgctgagctcgaca
cgttgaacgaggattcgnacaaggactcgaccttgatcatgcaacttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGAAGGCTTACCAGGAGGCTCT 652 255 14 Antisense
GAAGGCTTACCAGGAGGCTCTTGAT 34 333 18 Antisense
TTACCAGGAGGCTCTTGATATCGCT 298 681 24 Antisense
ACGAGATCTTGAACACTCCAGAGCA 609 93 116 Antisense
GATCTTGAACACTCCAGAGCACGCT 679 419 120 Antisense
TCTTGAACACTCCAGAGCACGCTTG 565 617 122 Antisense
GATGCTATTGCTGAGCTCGACACGT 326 413 172 Antisense
ATTGCTGAGCTCGACACGTTGAACG 671 5 178 Antisense
GCTCGACACGTTGAACGAGGATTCG 453 283 186 Antisense
AGGACTCGACCTTGATCATGCAACT 540 55 215 Antisense
GACTCGACCTTGATCATGCAACTTC 364 375 217 Antisense
Sequence Source Affymetrix Proprietary Database