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[173136_at]

Description AV199181_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199181 /DEF=Caenorhabditis elegans cDNA clone:yk541h9 : 3prime end, single read.
Cluster 6grp_total > 41      4grp_total > 22      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 63.5
(3)
A 		20.9
(-2)
A 		12.1
(-3)
A 		30.1
(-0.9)
A 		51
B 54.2
(3)
A 		14.4
(-2.4)
A 		9.6
(-3)
A 		41.9
(1.3)
A 		45
C 8.5
(-3)
A 		11.2
(-2.5)
A 		17.7
(-1.4)
A 		42.8
(3)
A 		34
avr 42.1
(3) 		15.5
(-2.5) 		13.1
(-3) 		38.3
(2.2) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 152.9
(3)
A 		25.5
(-2.8)
A 		107.9
(1)
P 		32.7
(-2.4)
A 		92.9
(0.3)
A 		20
(-3)
A 		133
B 62.7
(-3)
A 		108.8
(0.7)
P 		137.7
(3)
A 		105.5
(0.4)
P 		72.5
(-2.2)
A 		62.4
(-3)
A 		75
C 4.3
(-3)
A 		103.4
(3)
A 		34.4
(-1.2)
A 		101.7
(2.9)
A 		27.5
(-1.6)
A 		45.9
(-0.5)
A 		99
avr 73.3
(0.6) 		79.2
(1.3) 		93.3
(3) 		80
(1.4) 		64.3
(-0.4) 		42.8
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.1
(3)
A 		4.5
(-2.6)
A 		3.2
(-3)
A 		4.4
(-2.6)
A 		20
B 17.3
(3)
A 		3.6
(-2.4)
A 		2.2
(-3)
A 		8.9
(-0.3)
A 		15
C 2.8
(-3)
A 		3.2
(-2.5)
A 		6.2
(1.6)
A 		7.2
(3)
A 		4
avr 14.4
(3) 		3.8
(-3) 		3.9
(-2.9) 		6.8
(-1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 28.2
(3)
A 		9.1
(-1.9)
A 		23.5
(1.8)
P 		8.3
(-2.1)
A 		28
(2.9)
A 		4.9
(-3)
A 		23
B 21.8
(-3)
A 		36.2
(3)
P 		33.4
(1.8)
A 		27.9
(-0.5)
P 		29.5
(0.2)
A 		23.3
(-2.4)
A 		14
C 1.6
(-3)
A 		31.5
(3)
A 		8.8
(-1.6)
A 		20.5
(0.8)
A 		8.9
(-1.5)
A 		15.4
(-0.2)
A 		30
avr 17.2
(-1.5) 		25.6
(3) 		21.9
(1) 		18.9
(-0.6) 		22.1
(1.1) 		14.5
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26941
Sequence Type Exemplar sequence
Representative Public ID AV199181 NCBI
Target Description AV199181_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199181 /DEF=Caenorhabditis elegans cDNA clone:yk541h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199181
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199181 AV199181_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199181 /DEF=Caenorhabditis elegans cDNA clone:yk541h9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058476 11/11 Negative Strand Matching Probes A 
GENEFINDER00000001822 11/11 Negative Strand Matching Probes None
SNAP00000001774 11/11 Negative Strand Matching Probes None
Y71G12B.21 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1655900-1656641(+) 98.33 100.0
Sequence
Target Sequence 
>C. ELEGANS:173136_AT
gaagttattggatggcggctgtgtttgaaatccttgctgctgcggttgctgttggttttg
attgttgttcccaccaaaaaatccgccattattattgttcaatccctggttctgttgatt
ctgttgcggctggaatcctccatttccaccaaaaaatgctccaggagtcgttgagatccc
attttctagattcccaaagaatccgcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTATTGGATGGCGGCTGTGTT 427 335 31 Antisense
GGCTGTGTTTGAAATCCTTGCTGCT 325 541 47 Antisense
CTGCGGTTGCTGTTGGTTTTGATTG 440 237 70 Antisense
AAAATCCGCCATTATTATTGTTCAA 121 133 108 Antisense
TATTGTTCAATCCCTGGTTCTGTTG 699 665 123 Antisense
ATCCCTGGTTCTGTTGATTCTGTTG 237 39 132 Antisense
GATTCTGTTGCGGCTGGAATCCTCC 532 431 147 Antisense
CCACCAAAAAATGCTCCAGGAGTCG 498 273 176 Antisense
GTCGTTGAGATCCCATTTTCTAGAT 596 473 197 Antisense
ATCCCATTTTCTAGATTCCCAAAGA 553 37 206 Antisense
CTAGATTCCCAAAGAATCCGCCTCC 232 225 216 Antisense
Sequence Source Affymetrix Proprietary Database