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[173135_s_at]

Description AV200353_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200353 /DEF=Caenorhabditis elegans cDNA clone:yk574a7 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 91.9
(-1.3)
A 		57.3
(-3)
A 		104.7
(-0.7)
P 		181.9
(3)
P 		125
B 134.2
(2.4)
A 		70.5
(-3)
A 		93.3
(-1.1)
A 		141
(3)
P 		71
C 62.6
(-3)
A 		107.2
(-1.1)
A 		132.6
(0.1)
P 		199.9
(3)
P 		137
avr 96.2
(-1.9) 		78.3
(-3) 		110.2
(-1) 		174.3
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 40.5
(-3)
A 		74
(-2.5)
P 		70.8
(-2.6)
P 		93.5
(-2.2)
P 		297
(0.7)
P 		455.9
(3)
P 		415
B 60.8
(-3)
A 		63.7
(-3)
A 		140.6
(-1.9)
P 		123.5
(-2.2)
P 		271.9
(-0.2)
P 		514.3
(3)
P 		454
C 52.5
(-3)
A 		94.9
(-2.4)
A 		85.7
(-2.5)
P 		170.4
(-1.3)
P 		318
(0.7)
P 		479.5
(3)
P 		427
avr 51.3
(-3) 		77.5
(-2.6) 		99
(-2.3) 		129.1
(-1.9) 		295.6
(0.4) 		483.2
(3) 		432
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 33.4
(3)
A 		12.4
(-3)
A 		27.4
(1.3)
P 		26.6
(1.1)
P 		21
B 42.8
(3)
A 		17.4
(-3)
A 		21.6
(-2)
A 		30.1
(0)
P 		25
C 20.7
(-3)
A 		30.8
(-0.6)
A 		46.2
(3)
P 		33.7
(0.1)
P 		26
avr 32.3
(3) 		20.2
(-3) 		31.7
(2.7) 		30.1
(1.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 7.5
(-3)
A 		26.3
(-1.9)
P 		15.4
(-2.5)
P 		23.7
(-2.1)
P 		89.6
(1.8)
P 		111
(3)
P 		104
B 21.1
(-3)
A 		21.2
(-3)
A 		34.1
(-2.5)
P 		32.7
(-2.6)
P 		110.5
(0.1)
P 		191.8
(3)
P 		171
C 19.5
(-3)
A 		29
(-2.6)
A 		21.8
(-2.9)
P 		34.3
(-2.4)
P 		102.9
(0.5)
P 		160.5
(3)
P 		141
avr 16
(-3) 		25.5
(-2.6) 		23.8
(-2.7) 		30.2
(-2.4) 		101
(0.7) 		154.4
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173135_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26998
Sequence Type Exemplar sequence
Representative Public ID AV200353 NCBI
Target Description AV200353_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200353 /DEF=Caenorhabditis elegans cDNA clone:yk574a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067438(11), NM_067437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067438 NCBI Caenorhabditis elegans K08E3.3a (K08E3.3) mRNA, complete cds. 11/11 A 
NM_067437 NCBI Caenorhabditis elegans K08E3.3b (K08E3.3) mRNA, complete cds. 11/11 A 
SNAP00000031962 ENSEMBL cdna:SNAP chromosome:CEL140:III:13752038:13758864:1 11/11 None
GENEFINDER00000031975 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13754400:13758864:1 11/11 None
K08E3.3a ENSEMBL cdna:known chromosome:CEL140:III:13755458:13758928:1 gene:K08E3.3 11/11 A 
K08E3.3b ENSEMBL cdna:known chromosome:CEL140:III:13755515:13758943:1 gene:K08E3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13758470-13758826(+) 70.33 70.33
Public Domain and Genome References
Ensembl K08E3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04591 Hypothetical protein K08E3.3a [Caenorhabditis elegans] ref|NP_499839.2| K08E3.3a [Caenorhabditis elegans] 0.0
blast CAB04595 Hypothetical protein K08E3.3b [Caenorhabditis elegans] ref|NP_499838.2| K08E3.3b [Caenorhabditis elegans] 0.0
blast CAE71363 Hypothetical protein CBG18267 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 9.0E-10
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 2.0E-25
Pfam IPR001452 EMBL-EBI SH3 5.8E-8
Pfam IPR001452 EMBL-EBI SH3 9.0E-10
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.6E-4
Pfam IPR001452 EMBL-EBI SH3 9.0E-10
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:173135_S_AT
cattttcaggtgccattcgcaaatctttatcgactcccgattcagttaaagtcgagacag
cggttacggtaaccgcactgttcgaatttgccaaatcctccgcggagaccangtccatcg
agcagggcgaaattcttctcgtactcgaacacgat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTCAGGTGCCATTCGCAAATC 387 215 29 Antisense
TTCGCAAATCTTTATCGACTCCCGA 459 695 44 Antisense
ATCTTTATCGACTCCCGATTCAGTT 517 29 51 Antisense
GACTCCCGATTCAGTTAAAGTCGAG 172 315 60 Antisense
GTCGAGACAGCGGTTACGGTAACCG 106 475 79 Antisense
TTACGGTAACCGCACTGTTCGAATT 375 659 92 Antisense
GTAACCGCACTGTTCGAATTTGCCA 163 463 97 Antisense
GTTCGAATTTGCCAAATCCTCCGCG 224 443 108 Antisense
GTCCATCGAGCAGGGCGAAATTCTT 468 477 141 Antisense
GCAGGGCGAAATTCTTCTCGTACTC 699 309 150 Antisense
AATTCTTCTCGTACTCGAACACGAT 323 177 159 Antisense
Sequence Source Affymetrix Proprietary Database