[Home] | [Total List]

[173134_at]

Description AV200121_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200121 /DEF=Caenorhabditis elegans cDNA clone:yk557b1 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 45.4
(-0.4)
A 		40.3
(-0.8)
A 		10.2
(-3)
A 		92.1
(3)
A 		82
B 43.7
(3)
A 		35.8
(1.1)
A 		18.3
(-3)
A 		27.5
(-0.8)
A 		25
C 30.2
(-0.5)
A 		42.8
(3)
A 		37.4
(1.5)
A 		21.1
(-3)
A 		22
avr 39.8
(1.3) 		39.6
(1.2) 		22
(-3) 		46.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 25.9
(-2.2)
A 		14.8
(-2.8)
A 		30.7
(-1.9)
A 		12.2
(-3)
A 		39.7
(-1.4)
A 		113.6
(3)
A 		101
B 28.6
(-3)
A 		48.5
(-1.4)
A 		45.9
(-1.6)
A 		54.9
(-0.9)
A 		51.5
(-1.1)
A 		102
(3)
A 		73
C 37.5
(-2.2)
A 		32.2
(-3)
A 		64.3
(1.9)
A 		35.7
(-2.5)
A 		65.5
(2)
A 		71.8
(3)
A 		40
avr 30.7
(-3) 		31.8
(-2.9) 		47
(-1.5) 		34.3
(-2.7) 		52.2
(-1) 		95.8
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16.5
(3)
A 		8.7
(-0.4)
A 		2.7
(-3)
A 		13.5
(1.7)
A 		14
B 13.9
(3)
A 		8.8
(-0.2)
A 		4.2
(-3)
A 		5.9
(-1.9)
A 		10
C 10
(1.1)
A 		12.3
(2.6)
A 		13
(3)
A 		3.6
(-3)
A 		9
avr 13.5
(3) 		9.9
(-0.1) 		6.6
(-3) 		7.7
(-2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 4.8
(-2.6)
A 		5.3
(-2.5)
A 		6.7
(-2.1)
A 		3.1
(-3)
A 		12
(-0.8)
A 		27.7
(3)
A 		25
B 10
(-3)
A 		16.1
(-1.7)
A 		11.2
(-2.7)
A 		14.5
(-2)
A 		20.9
(-0.7)
A 		38
(3)
A 		28
C 13.9
(-0.6)
A 		9.8
(-2.1)
A 		16.4
(0.3)
A 		7.2
(-3)
A 		21.2
(2)
A 		24
(3)
A 		17
avr 9.6
(-2.6) 		10.4
(-2.4) 		11.4
(-2.1) 		8.3
(-3) 		18
(-0.3) 		29.9
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26984
Sequence Type Exemplar sequence
Representative Public ID AV200121 NCBI
Target Description AV200121_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200121 /DEF=Caenorhabditis elegans cDNA clone:yk557b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066830(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066830 NCBI Caenorhabditis elegans T16G12.3 (T16G12.3) mRNA, complete cds. 9/11 None
T16G12.3 ENSEMBL cdna:known chromosome:CEL140:III:10051956:10054188:1 gene:T16G12.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl T16G12.3
Entrez Gene 176417 Entrez gene
SwissProt Q22532 EMBL-EBI
WormBase CE34094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 0.0
blast AAC48143 Hypothetical protein F20B4.2 [Caenorhabditis elegans] ref|NP_510858.1| F20B4.2 [Caenorhabditis elegans] 1.0E-163
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:173134_AT
ggttggtcaatttttgttccatttgttnaatnnggaaaattccattttttaattaattaa
atattattatttggattaccnccatttgggtatttcctaangcaagngggcccccccccc
cgcacactcgcgttattgcggagcgtcgtactcccgtaaatccacacaaatattcagatg
cctttttaggccaactcattcagtcttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGTCAATTTTTGTTCCATTTG 516 505 75 Antisense
TTGGTCAATTTTTGTTCCATTTGTT 361 699 77 Antisense
CCCCGCACACTCGCGTTATTGCGGA 632 261 192 Antisense
GCACACTCGCGTTATTGCGGAGCGT 433 317 196 Antisense
CACTCGCGTTATTGCGGAGCGTCGT 194 195 199 Antisense
CGTTATTGCGGAGCGTCGTACTCCC 443 245 205 Antisense
GTACTCCCGTAAATCCACACAAATA 267 457 222 Antisense
TCCACACAAATATTCAGATGCCTTT 490 587 235 Antisense
TCAGATGCCTTTTTAGGCCAACTCA 112 613 248 Antisense
CCTTTTTAGGCCAACTCATTCAGTC 363 267 255 Antisense
TTTTAGGCCAACTCATTCAGTCTTC 60 671 258 Antisense
Sequence Source Affymetrix Proprietary Database