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[173133_s_at]

Description AV184852_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184852 /DEF=Caenorhabditis elegans cDNA clone:yk670c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 45      4grp_high_8_8 > 0      6grp_highest_nonorm > 86      6grp_total > 38      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 1248.5
(3)
P 		1018.5
(-3)
P 		1161
(0.7)
P 		1177.4
(1.1)
P 		230
B 1157.7
(0.3)
P 		978.1
(-3)
P 		1087.4
(-1)
P 		1304
(3)
P 		326
C 1132.3
(3)
P 		1130.2
(2.9)
P 		1052.4
(-1.1)
P 		1015.1
(-3)
P 		117
avr 1179.5
(3) 		1042.3
(-3) 		1100.3
(-0.5) 		1165.5
(2.4) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 1164.4
(1.3)
P 		996.8
(-0.4)
P 		792.2
(-2.4)
P 		726.6
(-3)
P 		948.4
(-0.8)
P 		1342.7
(3)
P 		616
B 1459
(3)
P 		1095
(-0.1)
P 		930.9
(-1.5)
P 		937
(-1.4)
P 		748.5
(-3)
P 		1146.1
(0.4)
P 		711
C 1324.3
(3)
P 		908.1
(-2.8)
P 		947.1
(-2.3)
P 		896.4
(-3)
P 		996.4
(-1.6)
P 		1100.5
(-0.1)
P 		428
avr 1315.9
(3) 		1000
(-1.1) 		890.1
(-2.5) 		853.3
(-3) 		897.8
(-2.4) 		1196.4
(1.5) 		463
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 454.6
(3)
P 		221.1
(-2)
P 		303.5
(-0.2)
P 		172.4
(-3)
P 		282
B 369.2
(3)
P 		241.6
(-3)
P 		252
(-2.5)
P 		277.9
(-1.3)
P 		128
C 374.8
(3)
P 		324.9
(1.5)
P 		366.8
(2.8)
P 		171.2
(-3)
P 		204
avr 399.5
(3) 		262.5
(-1.3) 		307.4
(0.1) 		207.2
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 214.7
(-1.6)
P 		354.5
(3)
P 		172.5
(-3)
P 		184.3
(-2.6)
P 		286.2
(0.7)
P 		326.9
(2.1)
P 		182
B 507.7
(3)
P 		364.5
(-0.1)
P 		226
(-3)
P 		248.2
(-2.5)
P 		304.1
(-1.3)
P 		427.4
(1.3)
P 		282
C 490.9
(3)
P 		277.1
(-1.1)
P 		241.1
(-1.8)
P 		180.3
(-3)
P 		322.4
(-0.3)
P 		368.4
(0.6)
P 		311
avr 404.4
(3) 		332
(0.8) 		213.2
(-2.7) 		204.3
(-3) 		304.2
(-0) 		374.2
(2.1) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173133_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26891
Sequence Type Exemplar sequence
Representative Public ID AV184852 NCBI
Target Description AV184852_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184852 /DEF=Caenorhabditis elegans cDNA clone:yk670c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066604 NCBI Caenorhabditis elegans CLASP family of microtubule-binding proteins family member (cls-2) (cls-2) mRNA, complete cds. 11/11 A 
SNAP00000003027 ENSEMBL cdna:SNAP chromosome:CEL140:III:9054957:9058531:1 11/11 None
GENEFINDER00000003033 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9054957:9058531:1 11/11 None
R107.6.3 ENSEMBL cdna:known chromosome:CEL140:III:9054955:9058531:1 gene:R107.6 11/11 None
R107.6.2 ENSEMBL cdna:known chromosome:CEL140:III:9054957:9058787:1 gene:R107.6 11/11 A 
R107.6.1 ENSEMBL cdna:known chromosome:CEL140:III:9054957:9058748:1 gene:R107.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9058428-9058684(+) 85.33 85.33
Public Domain and Genome References
Gene Title
Gene Symbol cls-2
Ensembl R107.6
Entrez Gene 176280 Entrez gene
SwissProt P32744 EMBL-EBI
WormBase CE37546 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588577_AT similar to CLIP-associating protein 2 cfa
CANINE_2:CFA.10409.1.A1_AT similar to CLIP-associating protein 2 cfa
CANINE_2:CFA.17279.1.S1_AT similar to CLIP-associating protein 2 cfa
CANINE_2:CFAAFFX.7775.1.S1_S_AT similar to CLIP-associating protein 2 cfa
CHICKEN:GGAAFFX.23727.1.S1_S_AT similar to KIAA0627 protein gga
CHICKEN:GGAAFFX.7611.2.S1_AT similar to KIAA0627 protein gga
CHICKEN:GGAAFFX.7611.2.S1_S_AT similar to KIAA0627 protein gga
HU35KSUBA:RC_AA262710_S_AT cytoplasmic linker associated protein 2 hs
HU35KSUBB:RC_AA122225_AT cytoplasmic linker associated protein 2 hs
HU35KSUBC:RC_D51159_S_AT cytoplasmic linker associated protein 2 hs
HU35KSUBD:RC_AA211300_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS2.108614.1.S1_3P_S_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S3_3P_X_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S3_3P_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S2_3P_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS.108614.0.S1_3P_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:1555469_A_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:1558759_S_AT cytoplasmic linker associated protein 2 hs
HG-U133A_2:212306_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:212306_AT cytoplasmic linker associated protein 2 hs
HG-U133A:212306_AT cytoplasmic linker associated protein 2 hs
HG-U133A_2:212308_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:212308_AT cytoplasmic linker associated protein 2 hs
HG-U133A:212308_AT cytoplasmic linker associated protein 2 hs
HG-U133A_2:212309_AT cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:212309_AT cytoplasmic linker associated protein 2 hs
HG-U133A:212309_AT cytoplasmic linker associated protein 2 hs
HG-U95AV2:38711_AT cytoplasmic linker associated protein 2 hs
HG-U95B:49920_AT cytoplasmic linker associated protein 2 hs
HG-U95C:64336_I_AT cytoplasmic linker associated protein 2 hs
HG-U95C:64337_F_AT cytoplasmic linker associated protein 2 hs
HG-U95D:86611_AT cytoplasmic linker associated protein 2 hs
HG-U95D:88655_AT cytoplasmic linker associated protein 2 hs
U133_X3P:HS2.108614.5.S1_3P_S_AT Cytoplasmic linker associated protein 2 hs
HG-U133_PLUS_2:238224_AT Cytoplasmic linker associated protein 2 hs
HG-U133B:238224_AT Cytoplasmic linker associated protein 2 hs
HG-U95C:53998_AT Cytoplasmic linker associated protein 2 hs
HG-U95C:54177_I_AT Cytoplasmic linker associated protein 2 hs
HG-U95D:79298_AT Cytoplasmic linker associated protein 2 hs
HG-U95D:83342_AT Cytoplasmic linker associated protein 2 hs
HG-U95D:88964_R_AT Cytoplasmic linker associated protein 2 hs
U133_X3P:HS.176420.0.A1_3P_AT Cytoplasmic linker associated protein 2 hs
HU35KSUBD:RC_AA436671_AT Cytoplasmic linker associated protein 2 hs
MOE430A:1429976_AT CLIP associating protein 2 mm
MOUSE430_2:1429976_AT CLIP associating protein 2 mm
MOUSE430A_2:1429976_AT CLIP associating protein 2 mm
MOUSE430_2:1456911_AT CLIP associating protein 2 mm
MOE430B:1456911_AT CLIP associating protein 2 mm
MOUSE430_2:1424836_A_AT CLIP associating protein 2 mm
MOE430A:1424836_A_AT CLIP associating protein 2 mm
MOUSE430A_2:1424836_A_AT CLIP associating protein 2 mm
MOE430A:1427328_A_AT CLIP associating protein 2 mm
MOUSE430A_2:1427328_A_AT CLIP associating protein 2 mm
MOUSE430_2:1427328_A_AT CLIP associating protein 2 mm
MG-U74BV2:111038_AT CLIP associating protein 2 mm
MOE430B:1440802_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MOUSE430_2:1440802_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MOUSE430_2:1441726_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MOE430B:1441726_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MU19KSUBB:TC33429_F_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
MU19KSUBB:TC33429_I_AT CLIP associating protein 2, mRNA (cDNA clone IMAGE:5366873) mm
RG-U34C:RC_AI175481_AT CLIP associating protein 2 rn
RAE230A:1368099_AT CLIP associating protein 2 rn
RAT230_2:1368099_AT CLIP associating protein 2 rn
RAE230B:1396604_AT CLIP associating protein 2 rn
RAT230_2:1396604_AT CLIP associating protein 2 rn
RAE230B:1396698_AT CLIP associating protein 2 rn
RAT230_2:1396698_AT CLIP associating protein 2 rn
Protein Similarities
Method ID Description E-Value
blast CAA78472 Hypothetical protein R107.6 [Caenorhabditis elegans] ref|NP_499005.2| CLASP family of microtubule-binding proteins family member (cls-2) [Caenorhabditis elegans] sp|P32744|CLS2_CAEEL Kinetochore protein CLASP-2 0.0
blast S30876 hypothetical protein R107.6 - Caenorhabditis elegans 0.0
blast CAE65037 Hypothetical protein CBG09877 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010705 EMBL-EBI Mast, C-terminal 4.3E-87
Pfam IPR010705 EMBL-EBI Mast, C-terminal 4.3E-87
Sequence
Target Sequence 
>C. ELEGANS:173133_S_AT
atggagccacatcttcaaaatctgtcgtctggaaagctgaaccttgtccaagtctacgtc
aatcgggcaatgtcgtccagttcacattcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGCCACATCTTCAAAATCTGT 88 53 13 Antisense
TCAAAATCTGTCGTCTGGAAAGCTG 579 625 27 Antisense
GTCGTCTGGAAAGCTGAACCTTGTC 445 469 36 Antisense
GGAAAGCTGAACCTTGTCCAAGTCT 428 525 43 Antisense
GCTGAACCTTGTCCAAGTCTACGTC 656 235 48 Antisense
AACCTTGTCCAAGTCTACGTCAATC 144 147 52 Antisense
GTCCAAGTCTACGTCAATCGGGCAA 564 477 58 Antisense
AAGTCTACGTCAATCGGGCAATGTC 276 157 62 Antisense
GTCAATCGGGCAATGTCGTCCAGTT 445 463 70 Antisense
CAATCGGGCAATGTCGTCCAGTTCA 615 161 72 Antisense
CAATGTCGTCCAGTTCACATTCGCA 344 183 80 Antisense
Sequence Source Affymetrix Proprietary Database