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[173132_s_at]

Description AV183124_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183124 /DEF=Caenorhabditis elegans cDNA clone:yk646h1 : 3prime end, single read.
Cluster 6grp_total > 53      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 24.8
(-0.4)
A 		40.8
(3)
A 		12.9
(-3)
A 		35.9
(1.9)
A 		28
B 8.4
(-3)
A 		26.1
(-0.6)
A 		53.2
(3)
P 		18.8
(-1.6)
A 		45
C 11.8
(-3)
A 		41.3
(2.5)
A 		43.7
(3)
P 		16.1
(-2.2)
A 		32
avr 15
(-3) 		36.1
(2.9) 		36.6
(3) 		23.6
(-0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 6.2
(-2.9)
A 		65.7
(1)
P 		96.5
(3)
P 		43.3
(-0.4)
P 		3.9
(-3)
A 		42.1
(-0.5)
A 		93
B 33.3
(-2.4)
P 		24.1
(-2.9)
P 		128.6
(3)
P 		60.5
(-0.8)
M 		22.4
(-3)
A 		49.6
(-1.5)
P 		106
C 22
(-2.8)
A 		58.7
(-0.3)
P 		108.7
(3)
P 		54.4
(-0.6)
P 		18.4
(-3)
A 		45.8
(-1.2)
P 		90
avr 20.5
(-2.7) 		49.5
(-0.8) 		111.3
(3) 		52.7
(-0.6) 		14.9
(-3) 		45.8
(-1.1) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(3)
A 		8.9
(2.9)
A 		3.4
(-3)
A 		5.2
(-1.1)
A 		6
B 2.7
(-3)
A 		6.4
(-0.7)
A 		12.3
(3)
P 		4
(-2.2)
A 		10
C 3.9
(-2.4)
A 		11.9
(1.4)
A 		15.2
(3)
P 		2.7
(-3)
A 		13
avr 5.2
(-1.9) 		9.1
(1.9) 		10.3
(3) 		4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 1.1
(-3)
A 		23.4
(3)
P 		21
(2.4)
P 		11
(-0.3)
P 		1.2
(-3)
A 		10.3
(-0.5)
A 		22
B 11.6
(-2.1)
P 		8
(-3)
P 		31.2
(3)
P 		16
(-0.9)
M 		9.1
(-2.7)
A 		18.5
(-0.3)
P 		23
C 8.2
(-2.4)
A 		17.9
(0.3)
P 		27.7
(3)
P 		10.9
(-1.6)
P 		5.9
(-3)
A 		15.3
(-0.4)
P 		22
avr 7
(-2.5) 		16.4
(0.1) 		26.6
(3) 		12.6
(-1) 		5.4
(-3) 		14.7
(-0.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173132_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26840
Sequence Type Exemplar sequence
Representative Public ID AV183124 NCBI
Target Description AV183124_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183124 /DEF=Caenorhabditis elegans cDNA clone:yk646h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071132 NCBI Caenorhabditis elegans T06A1.1 (T06A1.1) mRNA, complete cds. 11/11 A 
SNAP00000019757 ENSEMBL cdna:SNAP chromosome:CEL140:V:1922992:1923890:-1 11/11 None
GENEFINDER00000019764 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1922992:1925378:-1 11/11 None
T06A1.1 ENSEMBL cdna:known chromosome:CEL140:V:1922992:1925393:-1 gene:T06A1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1923057-1923257(-) 66.33 66.33
Public Domain and Genome References
Gene Title
Ensembl T06A1.1
Entrez Gene 178673 Entrez gene
SwissProt O61930 EMBL-EBI
WormBase CE18205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 0.0
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 1.0E-159
blast CAE58528 Hypothetical protein CBG01683 [Caenorhabditis briggsae] 1.0E-141
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 1.0E-135
blast AAB65375 Hypothetical protein C05C8.8 [Caenorhabditis elegans] ref|NP_504844.1| C05C8.8 [Caenorhabditis elegans] 1.0E-119
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 3.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.4E-49
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.8E-48
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.2E-24
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.4E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503533.1 1 7-24
T06A1.1 1 7-24
GENEFINDER00000019764 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:173132_S_AT
gagacacatgtaatgtcagtgccgaagagatttgcttatgtcagacactaccgaagtgtg
gacaacaacaaattgaacagcaactggaggaccttttacaaaggagacctaaccgaaaca
cgactagctgagccatttgaaaagcaactcattgaagcggtcacgaaacgtgtcaaatac
gtgtatgagcaacgaatgatccgctgcgaagaaataccgccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACACATGTAATGTCAGTGCCGA 451 393 19 Antisense
GTCAGTGCCGAAGAGATTTGCTTAT 359 465 33 Antisense
GAGATTTGCTTATGTCAGACACTAC 353 397 45 Antisense
ACTACCGAAGTGTGGACAACAACAA 91 101 65 Antisense
ACAGCAACTGGAGGACCTTTTACAA 182 107 95 Antisense
GAGACCTAACCGAAACACGACTAGC 244 391 122 Antisense
AACACGACTAGCTGAGCCATTTGAA 48 135 135 Antisense
AAAGCAACTCATTGAAGCGGTCACG 358 123 159 Antisense
GAAGCGGTCACGAAACGTGTCAAAT 618 343 172 Antisense
ATGAGCAACGAATGATCCGCTGCGA 340 45 203 Antisense
TCCGCTGCGAAGAAATACCGCCGTG 379 593 218 Antisense
Sequence Source Affymetrix Proprietary Database