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[173128_s_at] beta-transducin like protein

Description AV183096_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183096 /DEF=Caenorhabditis elegans cDNA clone:yk646e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 62      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 459
(-0.6)
P 		378.8
(-3)
P 		503.2
(0.7)
P 		580.6
(3)
P 		202
B 442.6
(-3)
P 		502.4
(3)
P 		446
(-2.7)
P 		448.3
(-2.4)
P 		60
C 615
(3)
P 		593.5
(2.4)
P 		536.1
(0.7)
P 		413.1
(-3)
P 		202
avr 505.5
(3) 		491.6
(-0.4) 		495.1
(0.5) 		480.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1105
1 2 3 4 5 6 range
A 577.9
(-0.6)
P 		305.6
(-3)
P 		472.2
(-1.5)
P 		442.7
(-1.8)
P 		629.3
(-0.1)
P 		984.4
(3)
P 		679
B 372.3
(-2.8)
P 		331.6
(-3)
P 		384.6
(-2.7)
P 		546
(-1.8)
P 		720.7
(-0.8)
P 		1410.3
(3)
P 		1079
C 427.7
(-3)
P 		465.7
(-2.7)
P 		469.3
(-2.7)
P 		560.9
(-2)
P 		606.5
(-1.7)
P 		1257.8
(3)
P 		830
avr 459.3
(-2.4) 		367.6
(-3) 		442
(-2.5) 		516.5
(-1.9) 		652.2
(-1) 		1217.5
(3) 		850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 167.1
(3)
P 		82.2
(-3)
P 		131.6
(0.5)
P 		85
(-2.8)
P 		85
B 141.2
(3)
P 		124.1
(0.8)
P 		103.3
(-2)
P 		95.5
(-3)
P 		46
C 203.6
(3)
P 		170.6
(1.5)
P 		186.9
(2.3)
P 		69.7
(-3)
P 		134
avr 170.6
(3) 		125.6
(-0.1) 		140.6
(0.9) 		83.4
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 106.5
(-2.8)
P 		108.7
(-2.7)
P 		102.8
(-3)
P 		112.3
(-2.6)
P 		189.9
(0.8)
P 		239.7
(3)
P 		137
B 129.6
(-2.5)
P 		110.4
(-2.8)
P 		93.4
(-3)
P 		144.6
(-2.3)
P 		292.8
(-0.2)
P 		525.9
(3)
P 		433
C 158.5
(-2.1)
P 		142.1
(-2.4)
P 		119.5
(-2.9)
P 		112.8
(-3)
P 		196.3
(-1.4)
P 		421
(3)
P 		308
avr 131.5
(-2.5) 		120.4
(-2.7) 		105.2
(-3) 		123.2
(-2.6) 		226.3
(-0.5) 		395.5
(3) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173128_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26834
Sequence Type Exemplar sequence
Representative Public ID AV183096 NCBI
Target Description AV183096_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183096 /DEF=Caenorhabditis elegans cDNA clone:yk646e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074332 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-216) (tag-216) mRNA, complete cds. 11/11 A 
SNAP00000023075 ENSEMBL cdna:SNAP chromosome:CEL140:V:15136901:15139386:-1 11/11 None
GENEFINDER00000023078 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15136901:15139386:-1 11/11 None
K08F9.2.3 ENSEMBL cdna:known chromosome:CEL140:V:15136338:15139387:-1 gene:K08F9.2 11/11 A 
K08F9.2.2 ENSEMBL cdna:known chromosome:CEL140:V:15136779:15139389:-1 gene:K08F9.2 11/11 A 
K08F9.2.1 ENSEMBL cdna:known chromosome:CEL140:V:15136779:15139387:-1 gene:K08F9.2 11/11 A 
K08F9.2.4 ENSEMBL cdna:known chromosome:CEL140:V:15136832:15139386:-1 gene:K08F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15136881-15137175(-) 82.67 82.67
Public Domain and Genome References
Gene Title beta-transducin like protein
Gene Symbol tag-216
Ensembl K08F9.2
Entrez Gene 180022 Entrez gene
SwissProt O17939 EMBL-EBI
WormBase CE11944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03187 Hypothetical protein K08F9.2 [Caenorhabditis elegans] ref|NP_506733.1| Temporarily Assigned Gene name family member (tag-216) [Caenorhabditis elegans] 0.0
blast CAE74779 Hypothetical protein CBG22609 [Caenorhabditis briggsae] 0.0
blast AAA83588 Uncoordinated protein 78, isoform a [Caenorhabditis elegans] ref|NP_001024356.1| UNCoordinated family member (unc-78) [Caenorhabditis elegans] gb|AAK11613.1| UNC-78 [Caenorhabditis elegans] sp|Q11176|WDR1_CAEEL Actin interacting protein 1 (AIP1) (Uncoordinated protein 78) pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From Caenorhabditis Elegans pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.9E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.4E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.018
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0034
Sequence
Target Sequence 
>C. ELEGANS:173128_S_AT
aaagtactgacagtcgcatggtcccctgacaatcaacgtcttgccactggctccatcgac
accagtgtcattatctgggacatgaagaagccaggcgaacatccggttattattaaagga
gcccatccaatgtcatctgtgaatgtggtccgctggctcgatgagactacggtggtgtct
gctggacaagactcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTACTGACAGTCGCATGGTCCC 661 121 19 Antisense
CCACTGGCTCCATCGACACCAGTGT 259 273 62 Antisense
GACACCAGTGTCATTATCTGGGACA 81 369 76 Antisense
GGGACATGAAGAAGCCAGGCGAACA 392 495 95 Antisense
GCCAGGCGAACATCCGGTTATTATT 216 281 108 Antisense
GGTTATTATTAAAGGAGCCCATCCA 357 505 123 Antisense
AGCCCATCCAATGTCATCTGTGAAT 311 83 138 Antisense
CATCTGTGAATGTGGTCCGCTGGCT 293 213 152 Antisense
GTCCGCTGGCTCGATGAGACTACGG 47 477 166 Antisense
GAGACTACGGTGGTGTCTGCTGGAC 428 393 181 Antisense
GGTGTCTGCTGGACAAGACTCGAAC 682 497 192 Antisense
Sequence Source Affymetrix Proprietary Database