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[173127_at]

Description AV176957_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV176957 /DEF=Caenorhabditis elegans cDNA clone:yk521a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 08      4grp_total > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1146
1 2 3 4 range
A 261.2
(-1.6)
P 		95.1
(-3)
P 		172.7
(-2.3)
P 		793.9
(3)
P 		699
B 211.3
(-2.5)
P 		126.8
(-3)
P 		144.5
(-2.9)
P 		1240.8
(3)
P 		1114
C 186.7
(-2.7)
P 		150.5
(-3)
P 		204.3
(-2.5)
P 		793.6
(3)
P 		643
avr 219.7
(-2.3) 		124.1
(-3) 		173.8
(-2.6) 		942.8
(3) 		819

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 149.6
(3)
P 		146.5
(2.6)
P 		115.2
(-1.2)
P 		100.4
(-3)
P 		112.8
(-1.5)
P 		122.8
(-0.3)
P 		49
B 214.7
(3)
P 		111.4
(-2)
P 		200.7
(2.3)
P 		162.4
(0.4)
P 		91.9
(-3)
P 		167.3
(0.7)
P 		123
C 206.7
(3)
P 		149.9
(0.1)
P 		88.4
(-3)
P 		202.4
(2.8)
P 		127
(-1)
P 		140
(-0.4)
P 		118
avr 190.3
(3) 		135.9
(-1.1) 		134.8
(-1.2) 		155.1
(0.4) 		110.6
(-3) 		143.4
(-0.5) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 95.1
(1.7)
P 		20.6
(-3)
P 		45.2
(-1.5)
P 		116.2
(3)
P 		96
B 67.4
(-2.1)
P 		31.3
(-3)
P 		33.5
(-2.9)
P 		264.4
(3)
P 		233
C 61.8
(-1.8)
P 		43.3
(-3)
P 		71.2
(-1.2)
P 		133.8
(3)
P 		91
avr 74.8
(-1.2) 		31.7
(-3) 		50
(-2.2) 		171.5
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 27.6
(-2.4)
P 		52.1
(3)
P 		25.1
(-3)
P 		25.5
(-2.9)
P 		34
(-1)
P 		29.9
(-1.9)
P 		27
B 74.7
(3)
P 		37.1
(-3)
P 		48.7
(-1.1)
P 		43
(-2.1)
P 		37.3
(-3)
P 		62.4
(1)
P 		38
C 76.6
(3)
P 		45.8
(-0.4)
P 		22.5
(-3)
P 		40.7
(-1)
P 		41.1
(-0.9)
P 		46.9
(-0.3)
P 		54
avr 59.6
(3) 		45
(-0.2) 		32.1
(-3) 		36.4
(-2.1) 		37.5
(-1.8) 		46.4
(0.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27051
Sequence Type Exemplar sequence
Representative Public ID AV176957 NCBI
Target Description AV176957_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV176957 /DEF=Caenorhabditis elegans cDNA clone:yk521a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078138
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023758 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15330912:15333610:1 None
Y15E3A.4 ENSEMBL cdna:known chromosome:CEL140:X:15330881:15333867:1 gene:Y15E3A.4 None
NM_078138 NCBI Caenorhabditis elegans Y15E3A.4 (Y15E3A.4) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15333274-15333782(+) 87.0 87.0
Public Domain and Genome References
Gene Title
Ensembl Y15E3A.4
Entrez Gene 181623 Entrez gene
SwissProt Q9U2R3 EMBL-EBI
WormBase CE21371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60332 Hypothetical protein Y15E3A.4 [Caenorhabditis elegans] ref|NP_510539.1| Y15E3A.4 [Caenorhabditis elegans] 0.0
blast CAE63299 Hypothetical protein CBG07685 [Caenorhabditis briggsae] 0.0
blast AAC17018 Hypothetical protein H11E01.2 [Caenorhabditis elegans] ref|NP_508300.2| H11E01.2 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510539.1 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
Y15E3A.4 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
GENEFINDER00000023758 12 21-43,71-93,100-119,129-151,158-177,192-211,251-273,288-310,323-345,349-371,384-406,416-438
Sequence
Target Sequence 
>C. ELEGANS:173127_AT
gaaaacgaagcctaaatttggatatcggcgcgaacgacggatatcaccttctctaacact
ctcatttatggattctcttctcttttgttcttttgatttaagttnttgtttttattttta
gacagtgatgtgggtactttagcattcacttctaactttttcgaatgctga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACGAAGCCTAAATTTGGATAT 113 355 93 Antisense
ATTTGGATATCGGCGCGAACGACGG 540 9 108 Antisense
TCGGCGCGAACGACGGATATCACCT 509 605 117 Antisense
CCTTCTCTAACACTCTCATTTATGG 645 269 139 Antisense
AACACTCTCATTTATGGATTCTCTT 114 137 147 Antisense
CTCTCATTTATGGATTCTCTTCTCT 448 231 151 Antisense
GTTTTTATTTTTAGACAGTGATGTG 165 449 200 Antisense
GACAGTGATGTGGGTACTTTAGCAT 423 367 213 Antisense
GTGGGTACTTTAGCATTCACTTCTA 593 487 222 Antisense
GTACTTTAGCATTCACTTCTAACTT 100 461 226 Antisense
CACTTCTAACTTTTTCGAATGCTGA 426 197 239 Antisense
Sequence Source Affymetrix Proprietary Database