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[173124_s_at]

Description AV182934_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182934 /DEF=Caenorhabditis elegans cDNA clone:yk644e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      6grp_highest_nonorm > 44      6grp_total > 82      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3260
1 2 3 4 range
A 14.9
(-3)
A 		2819.8
(2.7)
P 		2969.7
(3)
P 		89.3
(-2.8)
A 		2955
B 10.5
(-3)
A 		3088.4
(2.8)
P 		3198.3
(3)
P 		67.2
(-2.9)
A 		3188
C 9.9
(-3)
A 		3270.1
(3)
P 		3233.8
(2.9)
P 		105
(-2.8)
A 		3260
avr 11.8
(-3) 		3059.4
(2.9) 		3133.9
(3) 		87.2
(-2.9) 		3122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2643
1 2 3 4 5 6 range
A 403.5
(-2.8)
P 		1955.4
(1.5)
P 		973.8
(-1.2)
P 		2514.6
(3)
P 		2138.9
(2)
P 		321.4
(-3)
P 		2193
B 440.2
(-2.9)
P 		1654.8
(-0)
P 		1591.1
(-0.2)
P 		2964
(3)
P 		1846.5
(0.4)
P 		376.1
(-3)
P 		2588
C 497.6
(-2.7)
P 		1621.4
(0.6)
P 		1376.3
(-0.1)
P 		2414.3
(2.9)
P 		2443.1
(3)
P 		380.2
(-3)
P 		2063
avr 447.1
(-2.8) 		1743.9
(0.7) 		1313.7
(-0.5) 		2631
(3) 		2142.8
(1.7) 		359.2
(-3) 		2272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1124
1 2 3 4 range
A 5.4
(-3)
A 		612.1
(1.7)
P 		776.3
(3)
P 		13.1
(-2.9)
A 		771
B 3.4
(-3)
A 		762.8
(3)
P 		741.1
(2.8)
P 		14.3
(-2.9)
A 		759
C 3.3
(-3)
A 		940.2
(2)
P 		1127.1
(3)
P 		17.7
(-2.9)
A 		1124
avr 4
(-3) 		771.7
(2.2) 		881.5
(3) 		15
(-2.9) 		878

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 74.4
(-3)
P 		695.4
(3)
P 		212.1
(-1.7)
P 		637.8
(2.4)
P 		645.4
(2.5)
P 		78.3
(-3)
P 		621
B 153.2
(-2.9)
P 		550.8
(0.8)
P 		386.4
(-0.7)
P 		785.1
(3)
P 		750.2
(2.7)
P 		140.2
(-3)
P 		645
C 184.4
(-2.5)
P 		494.7
(0.3)
P 		350.3
(-1)
P 		485.5
(0.2)
P 		790.5
(3)
P 		127.3
(-3)
P 		663
avr 137.3
(-2.8) 		580.3
(1.5) 		316.3
(-1) 		636.1
(2.1) 		728.7
(3) 		115.3
(-3) 		613
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173124_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26826
Sequence Type Exemplar sequence
Representative Public ID AV182934 NCBI
Target Description AV182934_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182934 /DEF=Caenorhabditis elegans cDNA clone:yk644e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075839 NCBI Caenorhabditis elegans H42K12.3 (H42K12.3) mRNA, complete cds. 11/11 A 
SNAP00000010277 ENSEMBL cdna:SNAP chromosome:CEL140:X:1311616:1316523:1 11/11 None
GENEFINDER00000010281 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1311616:1316523:1 11/11 None
H42K12.3.2 ENSEMBL cdna:known chromosome:CEL140:X:1311598:1316565:1 gene:H42K12.3 11/11 None
H42K12.3.1 ENSEMBL cdna:known chromosome:CEL140:X:1311600:1316631:1 gene:H42K12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1315281-1316520(+) 83.33 83.33
Public Domain and Genome References
Gene Title
Ensembl H42K12.3
Entrez Gene 180474 Entrez gene
SwissProt O17347 EMBL-EBI
WormBase CE11614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71266 Hypothetical protein H42K12.3 [Caenorhabditis elegans] ref|NP_508240.1| H42K12.3 [Caenorhabditis elegans] 0.0
blast CAE63570 Hypothetical protein CBG08058 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 6.4E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.3E-22
Sequence
Target Sequence 
>C. ELEGANS:173124_S_AT
ggtgatgatgagccaattgccgttgataacatttcagttgactctgcaccaagcagcatt
ttgccagtgctcaacgagcaagtctggggacactggcaaggaacttgtcagccattcgca
tcttcccagccatgcaacaatggattcatgatcggattcgaatcacgcgagtgcatcgcc
aaggaccccgctcagtgtgaaggaccattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGATGATGAGCCAATTGCCGTTG 269 501 29 Antisense
CATTTCAGTTGACTCTGCACCAAGC 445 213 58 Antisense
CTGCACCAAGCAGCATTTTGCCAGT 590 237 72 Antisense
AGCATTTTGCCAGTGCTCAACGAGC 671 77 83 Antisense
GCTCAACGAGCAAGTCTGGGGACAC 54 301 97 Antisense
GTCTGGGGACACTGGCAAGGAACTT 347 471 110 Antisense
GCAAGGAACTTGTCAGCCATTCGCA 320 321 124 Antisense
CATCTTCCCAGCCATGCAACAATGG 403 213 147 Antisense
GATCGGATTCGAATCACGCGAGTGC 94 419 178 Antisense
TCACGCGAGTGCATCGCCAAGGACC 486 625 191 Antisense
CCCGCTCAGTGTGAAGGACCATTCT 282 1 215 Antisense
Sequence Source Affymetrix Proprietary Database