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[173123_at]

Description AV185552_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV185552 /DEF=Caenorhabditis elegans cDNA clone:yk679g8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 06      6grp_total > 56      4grp_total > 01      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 50.3
(-2.6)
P 		35.9
(-3)
A 		52.4
(-2.5)
P 		246.5
(3)
P 		211
B 76
(-3)
P 		80
(-2.8)
P 		87.6
(-2.6)
P 		231.2
(3)
P 		155
C 61.4
(-2.7)
P 		53.3
(-3)
P 		69.2
(-2.5)
P 		229.7
(3)
P 		176
avr 62.6
(-2.8) 		56.4
(-3) 		69.7
(-2.6) 		235.8
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 86.8
(3)
P 		44.4
(-3)
A 		83.6
(2.5)
P 		44.8
(-2.9)
A 		58.3
(-1)
A 		67.9
(0.3)
A 		42
B 63.3
(-2)
P 		82.9
(-0.8)
P 		62
(-2.1)
P 		110.1
(0.9)
P 		48.1
(-3)
P 		142.8
(3)
P 		95
C 35.7
(-1.6)
A 		98.8
(2.3)
P 		52.8
(-0.5)
P 		81.9
(1.3)
P 		12.6
(-3)
A 		109.9
(3)
P 		97
avr 61.9
(-1) 		75.4
(0.2) 		66.1
(-0.6) 		78.9
(0.5) 		39.7
(-3) 		106.9
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 18.3
(-0.8)
P 		7.8
(-3)
A 		13.7
(-1.7)
P 		36.1
(3)
P 		28
B 24.2
(-2.1)
P 		19.8
(-3)
P 		20.3
(-2.9)
P 		49.3
(3)
P 		30
C 20.3
(-1.7)
P 		15.3
(-3)
P 		24.1
(-0.7)
P 		38.7
(3)
P 		23
avr 20.9
(-1.5) 		14.3
(-3) 		19.4
(-1.9) 		41.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 16
(1.1)
P 		15.8
(0.9)
A 		18.2
(3)
P 		11.4
(-3)
A 		17.6
(2.5)
A 		16.5
(1.5)
A 		7
B 22
(-1.9)
P 		27.6
(-1)
P 		15.1
(-3)
P 		29.2
(-0.8)
P 		19.6
(-2.3)
P 		53.3
(3)
P 		38
C 13.2
(-1.3)
A 		30.2
(1.8)
P 		13.4
(-1.3)
P 		16.5
(-0.7)
P 		4.1
(-3)
A 		36.8
(3)
P 		33
avr 17.1
(-2.1) 		24.5
(-0) 		15.6
(-2.5) 		19
(-1.6) 		13.8
(-3) 		35.5
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26922
Sequence Type Exemplar sequence
Representative Public ID AV185552 NCBI
Target Description AV185552_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV185552 /DEF=Caenorhabditis elegans cDNA clone:yk679g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062685
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062685 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. None
C17G10.4c.1 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593395:-1 gene:C17G10.4 None
C17G10.4c.2 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593397:-1 gene:C17G10.4 None
GENEFINDER00000029033 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5589534:5593343:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026476 9/11 Negative Strand Matching Probes None
NM_001026475 9/11 Negative Strand Matching Probes None
SNAP00000018608 9/11 Negative Strand Matching Probes None
GENEFINDER00000018617 9/11 Negative Strand Matching Probes None
W01A8.1b.3 9/11 Negative Strand Matching Probes None
W01A8.1b.2 9/11 Negative Strand Matching Probes None
W01A8.1b.1 9/11 Negative Strand Matching Probes None
W01A8.1a 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5589983-5590172(-) 63.0 63.0
Public Domain and Genome References
Ensembl C17G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT74544 CDC-14 phosphatase isoform C [Caenorhabditis elegans] gb|AAB93458.1| Cell division cycle related protein 14, isoform c [Caenorhabditis elegans] ref|NP_495086.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] gb|AAB94407.1| protein phosphatase CDC14 [Caenorhabditis elegans] pir||E88158 protein C17G10.4c [imported] - Caenorhabditis elegans 0.0
blast AAT74543 CDC-14 phosphatase isoform B [Caenorhabditis elegans] gb|AAB93459.1| Cell division cycle related protein 14, isoform b [Caenorhabditis elegans] ref|NP_495084.3| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] sp|P81299|CDC14_CAEEL Probable tyrosine-protein phosphatase cdc-14 (Cell division cycle-related protein 14) pir||T34097 probable protein-tyrosine-phosphatase (EC 3.1.3.48) CDC14 - Caenorhabditis elegans 0.0
blast AAT74542 CDC-14 phosphatase isoform A [Caenorhabditis elegans] gb|AAM54205.1| Cell division cycle related protein 14, isoform a [Caenorhabditis elegans] ref|NP_495085.2| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029033 1 762-784
Sequence
Target Sequence 
>C. ELEGANS:173123_AT
gtctttgtgtatgcattgattgccgtttgtacgtaagcatttcctaagacttgatcgtag
tagctttgggcttgggcttgttgatcctcaactgatactggctgctcgacgcaaaaattg
aaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTTGTGTATGCATTGATTGCCG 460 469 13 Antisense
GTATGCATTGATTGCCGTTTGTACG 249 455 21 Antisense
GCCGTTTGTACGTAAGCATTTCCTA 306 279 34 Antisense
AAGCATTTCCTAAGACTTGATCGTA 691 149 47 Antisense
GACTTGATCGTAGTAGCTTTGGGCT 55 371 60 Antisense
GATCGTAGTAGCTTTGGGCTTGGGC 139 417 65 Antisense
GTAGCTTTGGGCTTGGGCTTGTTGA 148 457 72 Antisense
GCTTGGGCTTGTTGATCCTCAACTG 334 307 82 Antisense
TGATCCTCAACTGATACTGGCTGCT 23 567 94 Antisense
GATACTGGCTGCTCGACGCAAAAAT 647 423 106 Antisense
GGCTGCTCGACGCAAAAATTGAAGA 99 541 112 Antisense
Sequence Source Affymetrix Proprietary Database