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[173121_s_at]

Description AV182692_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182692 /DEF=Caenorhabditis elegans cDNA clone:yk641c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 26      4grp_total > 04      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 179.6
(-0.6)
P 		122.1
(-3)
P 		135.6
(-2.4)
P 		263
(3)
P 		141
B 203.3
(-1.3)
P 		121.7
(-3)
P 		129.5
(-2.8)
P 		402.4
(3)
P 		281
C 177.7
(-1.7)
P 		119.4
(-3)
P 		153.2
(-2.2)
P 		381.5
(3)
P 		262
avr 186.9
(-1.3) 		121.1
(-3) 		139.4
(-2.5) 		349
(3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 158
(3)
P 		135.1
(1.3)
P 		122.9
(0.4)
P 		147.6
(2.2)
P 		78.1
(-3)
P 		84.7
(-2.5)
P 		80
B 149.9
(3)
P 		143.2
(2.4)
P 		122.6
(0.7)
P 		109.8
(-0.4)
P 		78.7
(-3)
P 		144.6
(2.6)
P 		71
C 192.8
(3)
P 		186.3
(2.5)
P 		108.7
(-3)
P 		121.1
(-2.1)
P 		116.3
(-2.5)
P 		133.6
(-1.2)
P 		84
avr 166.9
(3) 		154.9
(2.1) 		118.1
(-0.9) 		126.2
(-0.2) 		91
(-3) 		121
(-0.6) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 65.4
(3)
P 		26.5
(-3)
P 		35.5
(-1.6)
P 		38.5
(-1.1)
P 		39
B 64.8
(0.7)
P 		30.1
(-3)
P 		30
(-3)
P 		85.7
(3)
P 		56
C 58.8
(1.9)
P 		34.3
(-3)
P 		53.4
(0.8)
P 		64.3
(3)
P 		30
avr 63
(3) 		30.3
(-3) 		39.6
(-1.3) 		62.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 29.1
(-1.1)
P 		48.1
(3)
P 		26.8
(-1.6)
P 		37.4
(0.7)
P 		23.6
(-2.3)
P 		20.6
(-3)
P 		28
B 52.2
(2.6)
P 		47.7
(1.5)
P 		29.8
(-2.8)
P 		29.1
(-3)
P 		32
(-2.3)
P 		53.9
(3)
P 		25
C 71.4
(3)
P 		56.8
(1.1)
P 		27.7
(-2.6)
P 		24.3
(-3)
P 		37.6
(-1.3)
P 		44.7
(-0.4)
P 		47
avr 50.9
(3) 		50.9
(3) 		28.1
(-3) 		30.3
(-2.4) 		31.1
(-2.2) 		39.7
(0.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173121_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26817
Sequence Type Exemplar sequence
Representative Public ID AV182692 NCBI
Target Description AV182692_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182692 /DEF=Caenorhabditis elegans cDNA clone:yk641c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029613 NCBI Caenorhabditis elegans K10B3.6a (K10B3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000032576 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3106625:3110606:-1 11/11 None
K10B3.6a ENSEMBL cdna:known chromosome:CEL140:X:3106544:3111332:-1 gene:K10B3.6 11/11 A 
K10B3.6b ENSEMBL cdna:known chromosome:CEL140:X:3106568:3111332:-1 gene:K10B3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032570 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180600 3 1 NM_001029613 173121_s_at (11), 173669_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3106638-3107832(-) 100.0 100.0
Public Domain and Genome References
Ensembl K10B3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53873 Hypothetical protein K10B3.6a [Caenorhabditis elegans] ref|NP_001024784.1| K10B3.6a [Caenorhabditis elegans] 0.0
blast CAE68379 Hypothetical protein CBG14135 [Caenorhabditis briggsae] 0.0
blast AAP46281 Hypothetical protein K10B3.6b [Caenorhabditis elegans] ref|NP_001024785.1| K10B3.6b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 1.1E-100
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 1.1E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024784.1 1 20-37
K10B3.6a 1 20-37
K10B3.6b 1 20-37
Sequence
Target Sequence 
>C. ELEGANS:173121_S_AT
gatgtgagcttcttggcgttaattttcatagtgaagaacttttgatcgatcaaaaaccaa
tagaaattgctgaaaaatatggacttataaaattcgtttggggagatgatcttaattcga
aggaagttcagaaacatttccgggatgaaatgaacgtcgatggtcttatctttgatagaa
tcggtgaagatgaggtgttgaagcagaatgtatttgtcgttgaaaaccacaatcggagct
ctctctttgctcgaagtcagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGAGCTTCTTGGCGTTAATTT 449 407 13 Antisense
GCTTCTTGGCGTTAATTTTCATAGT 633 305 20 Antisense
AAATTCGTTTGGGGAGATGATCTTA 18 115 102 Antisense
GGAAGTTCAGAAACATTTCCGGGAT 537 531 134 Antisense
TCCGGGATGAAATGAACGTCGATGG 88 471 151 Antisense
GAACGTCGATGGTCTTATCTTTGAT 119 349 164 Antisense
ATCGGTGAAGATGAGGTGTTGAAGC 669 33 192 Antisense
GAAGCAGAATGTATTTGTCGTTGAA 52 341 212 Antisense
GAAAACCACAATCGGAGCTCTCTCT 407 353 234 Antisense
CACAATCGGAGCTCTCTCTTTGCTC 616 193 240 Antisense
CTCTCTCTTTGCTCGAAGTCAGCAT 305 229 251 Antisense
Sequence Source Affymetrix Proprietary Database