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[173119_s_at]

Description AV182658_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182658 /DEF=Caenorhabditis elegans cDNA clone:yk640h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 61      6grp_total > 11      4grp_total > 11      6grp_highest_sub > 02      6grp_cgc > 44      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 439
1 2 3 4 range
A 390.9
(-2.1)
P 		466
(-0.2)
P 		354.3
(-3)
P 		590.7
(3)
P 		236
B 476.7
(-2.3)
P 		479
(-2.2)
P 		433.5
(-3)
P 		793.1
(3)
P 		360
C 392.4
(-3)
P 		409.9
(-2.7)
P 		394.4
(-3)
P 		730.3
(3)
P 		338
avr 420
(-2.5) 		451.6
(-1.9) 		394.1
(-3) 		704.7
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 435.5
(2.3)
P 		454.9
(3)
P 		399.6
(1.1)
P 		280.6
(-3)
P 		351.4
(-0.6)
P 		317.7
(-1.7)
P 		174
B 383.9
(-0.7)
P 		481.7
(3)
P 		470.5
(2.6)
P 		331.2
(-2.7)
P 		323.5
(-3)
P 		375.6
(-1)
P 		158
C 335.8
(-2.5)
P 		508.1
(3)
P 		366.7
(-1.5)
P 		321.5
(-3)
P 		367
(-1.5)
P 		383.9
(-1)
P 		187
avr 385.1
(-0.4) 		481.6
(3) 		412.3
(0.6) 		311.1
(-3) 		347.3
(-1.7) 		359.1
(-1.3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 142.3
(3)
P 		101.1
(-1.4)
P 		92.6
(-2.3)
P 		86.5
(-3)
P 		56
B 152
(1.5)
P 		118.3
(-1.4)
P 		100.5
(-3)
P 		169
(3)
P 		69
C 129.9
(0.7)
P 		117.8
(-3)
P 		137.4
(3)
P 		123.1
(-1.4)
P 		20
avr 141.4
(3) 		112.4
(-2.6) 		110.2
(-3) 		126.2
(0.1) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 80.3
(-2.4)
P 		161.8
(3)
P 		87
(-2)
P 		71.2
(-3)
P 		106
(-0.7)
P 		77.4
(-2.6)
P 		91
B 133.6
(0.8)
P 		160.3
(3)
P 		114.2
(-0.8)
P 		87.7
(-3)
P 		131.4
(0.6)
P 		140.1
(1.3)
P 		73
C 124.5
(1)
P 		155
(3)
P 		93.3
(-1.1)
P 		64.6
(-3)
P 		118.7
(0.6)
P 		128.5
(1.2)
P 		90
avr 112.8
(-0.3) 		159
(3) 		98.2
(-1.3) 		74.5
(-3) 		118.7
(0.1) 		115.3
(-0.1) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173119_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26815
Sequence Type Exemplar sequence
Representative Public ID AV182658 NCBI
Target Description AV182658_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182658 /DEF=Caenorhabditis elegans cDNA clone:yk640h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058395(11), NM_001026573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058395 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-1) (mig-1) mRNA, complete cds. 11/11 A 
NM_001026573 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-1) (mig-1) mRNA, complete cds. 11/11 None
Y34D9B.1a ENSEMBL cdna:known chromosome:CEL140:I:948576:957375:-1 gene:Y34D9B.1 11/11 A 
Y34D9B.1b ENSEMBL cdna:known chromosome:CEL140:I:948673:957321:-1 gene:Y34D9B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:948693-949185(-) 78.67 78.67
Public Domain and Genome References
Ensembl Y34D9B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60492 Abnormal cell migration protein 1, isoform a [Caenorhabditis elegans] ref|NP_490796.2| abnormal cell MIGration family member (mig-1) [Caenorhabditis elegans] gb|AAC46993.1| transmembrane receptor 0.0
blast AAF60493 Abnormal cell migration protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021744.1| abnormal cell MIGration family member (mig-1) [Caenorhabditis elegans] 0.0
blast CAE61302 Hypothetical protein CBG05130 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000024 EMBL-EBI Frizzled CRD region 1.0E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490796.2 7 4-21,218-240,250-272,341-363,390-409,416-438,458-480
NP_001021744.1 7 4-21,217-239,254-276,345-367,394-413,420-442,462-484
Y34D9B.1a 7 4-21,218-240,250-272,341-363,390-409,416-438,458-480
Y34D9B.1b 7 4-21,217-239,254-276,345-367,394-413,420-442,462-484
Sequence
Target Sequence 
>C. ELEGANS:173119_S_AT
aaccgtttctctcacttgacagaagtttcaatgcggtctcggcgaccaagttctcgtttg
atctacttttgagcttcatcatgtgcgcgttttgtcttatttacttgctgttcaagctga
ctagatcctcatcaaaagttagcaaagaaggatatcaaccggcggtgccgaaactcccgc
aaccggcaattcccggcagtgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGTTTCTCTCACTTGACAGAAG 460 147 21 Antisense
CAGAAGTTTCAATGCGGTCTCGGCG 402 193 40 Antisense
TCAATGCGGTCTCGGCGACCAAGTT 268 633 48 Antisense
GATCTACTTTTGAGCTTCATCATGT 640 419 80 Antisense
TTCATCATGTGCGCGTTTTGTCTTA 490 687 95 Antisense
GCGCGTTTTGTCTTATTTACTTGCT 424 287 105 Antisense
TTGTCTTATTTACTTGCTGTTCAAG 61 709 112 Antisense
TTGCTGTTCAAGCTGACTAGATCCT 334 701 125 Antisense
AAGAAGGATATCAACCGGCGGTGCC 310 151 165 Antisense
TATCAACCGGCGGTGCCGAAACTCC 173 657 173 Antisense
CAACCGGCAATTCCCGGCAGTGTAC 290 185 200 Antisense
Sequence Source Affymetrix Proprietary Database