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[173117_at]

Description AV199772_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199772 /DEF=Caenorhabditis elegans cDNA clone:yk551e4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 46      6grp_highest_nonorm > 71      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 49.3
(-3)
P 		697.3
(3)
P 		688.4
(2.9)
P 		62.8
(-2.9)
A 		648
B 58
(-2.9)
P 		666.3
(3)
P 		650.1
(2.8)
P 		49.3
(-3)
P 		617
C 34.5
(-3)
P 		669.4
(3)
P 		621.2
(2.5)
P 		73.9
(-2.6)
P 		635
avr 47.3
(-3) 		677.7
(3) 		653.2
(2.8) 		62
(-2.9) 		630

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 627
1 2 3 4 5 6 range
A 68.2
(-3)
P 		302.5
(0.1)
P 		523.8
(3)
P 		308.9
(0.2)
P 		484.2
(2.5)
P 		132.2
(-2.2)
P 		456
B 74.2
(-3)
P 		689.5
(3)
P 		374.3
(-0.1)
P 		571
(1.8)
P 		595.5
(2.1)
P 		194.9
(-1.8)
P 		615
C 80
(-3)
P 		695.4
(3)
P 		252.5
(-1.3)
P 		510.2
(1.2)
P 		299.2
(-0.9)
P 		154.2
(-2.3)
P 		615
avr 74.1
(-3) 		562.5
(3) 		383.5
(0.8) 		463.4
(1.8) 		459.6
(1.7) 		160.4
(-1.9) 		488
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 17.9
(-2.7)
P 		151.4
(2)
P 		180
(3)
P 		9.2
(-3)
A 		171
B 18.5
(-2.7)
P 		164.6
(3)
P 		150.6
(2.5)
P 		10.5
(-3)
P 		154
C 11.4
(-3)
P 		192.5
(2.3)
P 		216.5
(3)
P 		12.5
(-3)
P 		205
avr 15.9
(-2.8) 		169.5
(2.5) 		182.4
(3) 		10.7
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 12.6
(-3)
P 		107.6
(1.3)
P 		114.1
(1.6)
P 		78.3
(-0)
P 		146.1
(3)
P 		32.2
(-2.1)
P 		134
B 25.8
(-3)
P 		229.5
(2.7)
P 		90.9
(-1.2)
P 		151.2
(0.5)
P 		241.9
(3)
P 		72.7
(-1.7)
P 		216
C 29.6
(-3)
P 		212.2
(3)
P 		64.3
(-1.9)
P 		102.6
(-0.6)
P 		96.8
(-0.8)
P 		51.6
(-2.3)
P 		183
avr 22.7
(-3) 		183.1
(3) 		89.8
(-0.5) 		110.7
(0.3) 		161.6
(2.2) 		52.2
(-1.9) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26962
Sequence Type Exemplar sequence
Representative Public ID AV199772 NCBI
Target Description AV199772_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199772 /DEF=Caenorhabditis elegans cDNA clone:yk551e4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199772
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199772 AV199772_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV199772 /DEF=Caenorhabditis elegans cDNA clone:yk551e4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:18736-19523(+) 91.33 91.33
Sequence
Target Sequence 
>C. ELEGANS:173117_AT
tattatccacttcagcattatccacaattccatcatcattcaagtccattttttngaaga
actcataatccatgtcaactggccgccggctcatttcatagaccaatggcacaaactcag
aaatatccaagtgcccgttacggtccaaatcgaagcgttggaagtattnttgcccatcag
gcattcntcgattcatcataaaagtgattagttcnttntcggacagctttccatcattgt
tcgcatccacaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATCCACTTCAGCATTATCCAC 566 661 28 Antisense
CAGCATTATCCACAATTCCATCATC 133 205 40 Antisense
TTCCATCATCATTCAAGTCCATTTT 237 701 55 Antisense
GAAGAACTCATAATCCATGTCAACT 162 341 83 Antisense
TCATAATCCATGTCAACTGGCCGCC 125 621 90 Antisense
GGCTCATTTCATAGACCAATGGCAC 611 537 115 Antisense
TAGACCAATGGCACAAACTCAGAAA 328 651 126 Antisense
AACTCAGAAATATCCAAGTGCCCGT 263 141 141 Antisense
ATATCCAAGTGCCCGTTACGGTCCA 515 21 150 Antisense
GCCCGTTACGGTCCAAATCGAAGCG 16 1 160 Antisense
TTTCCATCATTGTTCGCATCCACAA 258 669 255 Antisense
Sequence Source Affymetrix Proprietary Database