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[173116_s_at] C2HC type zinc finger protein

Description AV182910_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182910 /DEF=Caenorhabditis elegans cDNA clone:yk644c1 : 3prime end, single read.
Cluster 4grp_high_8_8 > 36      6grp_total > 37      4grp_total > 35      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 132.4
(-2.4)
P 		248.1
(3)
P 		118.9
(-3)
A 		177.3
(-0.3)
A 		129
B 202.3
(0.7)
P 		266.5
(3)
P 		100.8
(-3)
M 		155.8
(-1)
P 		166
C 138.9
(-1.6)
P 		202
(3)
P 		119.5
(-3)
P 		151
(-0.7)
P 		83
avr 157.9
(-0.9) 		238.9
(3) 		113.1
(-3) 		161.4
(-0.7) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 248.5
(3)
P 		200.2
(1.4)
P 		70.5
(-2.9)
A 		66.4
(-3)
A 		80
(-2.6)
A 		245.3
(2.9)
P 		182
B 164.8
(1.1)
P 		178.7
(1.6)
P 		88.1
(-2.1)
A 		65.9
(-3)
A 		75.4
(-2.6)
M 		212
(3)
P 		146
C 215.6
(3)
P 		216.6
(3)
P 		106.1
(-1.1)
A 		54.6
(-3)
A 		70.5
(-2.4)
A 		184.7
(1.8)
P 		162
avr 209.6
(2.8) 		198.5
(2.4) 		88.2
(-2) 		62.3
(-3) 		75.3
(-2.5) 		214
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 48.2
(1.8)
P 		53.9
(3)
P 		31.1
(-1.9)
A 		25.9
(-3)
A 		28
B 64.5
(2.8)
P 		65.8
(3)
P 		23.4
(-3)
M 		33.2
(-1.6)
P 		42
C 46
(0.8)
P 		58.1
(3)
P 		41.6
(-0)
P 		25.5
(-3)
P 		33
avr 52.9
(1.8) 		59.3
(3) 		32
(-2.3) 		28.2
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 45.8
(0.3)
P 		71.2
(3)
P 		15.4
(-3)
A 		16.8
(-2.8)
A 		24.1
(-2.1)
A 		59.7
(1.8)
P 		56
B 57.3
(0.9)
P 		59.5
(1.1)
P 		21.4
(-2.6)
A 		17.4
(-3)
A 		30.6
(-1.7)
M 		79.1
(3)
P 		62
C 79.9
(3)
P 		66.1
(1.8)
P 		27
(-1.6)
A 		11
(-3)
A 		22.8
(-2)
A 		61.8
(1.4)
P 		69
avr 61
(2.3) 		65.6
(2.8) 		21.3
(-2.3) 		15.1
(-3) 		25.8
(-1.8) 		66.9
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173116_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26822
Sequence Type Exemplar sequence
Representative Public ID AV182910 NCBI
Target Description AV182910_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182910 /DEF=Caenorhabditis elegans cDNA clone:yk644c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060221 NCBI Caenorhabditis elegans F52F12.6 (F52F12.6) mRNA, complete cds. 11/11 A 
SNAP00000038778 ENSEMBL cdna:SNAP chromosome:CEL140:I:9912517:9916299:-1 11/11 None
GENEFINDER00000038791 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9912517:9918648:-1 11/11 None
F52F12.6 ENSEMBL cdna:known chromosome:CEL140:I:9911050:9918666:-1 gene:F52F12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9912473-9912721(-) 82.0 82.0
Public Domain and Genome References
Gene Title C2HC type zinc finger protein
Gene Symbol ekl-2
Ensembl F52F12.6
Entrez Gene 172845 Entrez gene
SwissProt O02274 EMBL-EBI
WormBase CE24995 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05737 Hypothetical protein F52F12.6 [Caenorhabditis elegans] ref|NP_492622.1| F52F12.6 [Caenorhabditis elegans] 0.0
blast AAB40716 C2-HC type zinc finger protein C.e-MyT1 [Caenorhabditis elegans] 0.0
blast CAE60275 Hypothetical protein CBG03854 [Caenorhabditis briggsae] 1.0E-146
blast CAE60275 Hypothetical protein CBG03854 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 7.4E-16
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 1.8E-15
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 7.4E-16
Pfam IPR002515 EMBL-EBI Zn-finger, C2HC type 1.8E-15
Sequence
Target Sequence 
>C. ELEGANS:173116_S_AT
tccatccgtgatcccagagattcaatcaacaccatcaagacctgttgctgctccagttgc
tcctggctccgcggaaaagagctccccaacatctcaaatgctccttcaaatgcctggatt
ctcggaggctcttctcaaaatgactgccccacaagtgccattccctcagtattccccaca
agcggctcttttcggaaatcaaagtgctctacttgctcaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCCGTGATCCCAGAGATTCAA 601 589 28 Antisense
GATCCCAGAGATTCAATCAACACCA 467 417 37 Antisense
ATTCAATCAACACCATCAAGACCTG 650 11 47 Antisense
AACACCATCAAGACCTGTTGCTGCT 461 135 55 Antisense
GAGCTCCCCAACATCTCAAATGCTC 44 387 106 Antisense
CTCAAATGCTCCTTCAAATGCCTGG 548 227 120 Antisense
GCTCCTTCAAATGCCTGGATTCTCG 279 299 127 Antisense
ATGCCTGGATTCTCGGAGGCTCTTC 501 41 137 Antisense
AGCGGCTCTTTTCGGAAATCAAAGT 409 69 208 Antisense
GAAATCAAAGTGCTCTACTTGCTCA 290 363 222 Antisense
TCAAAGTGCTCTACTTGCTCAAATC 321 629 226 Antisense
Sequence Source Affymetrix Proprietary Database